(Q50316230)

2 March 2018

title

The Effect of DNA Extraction Methods on Observed Microbial Communities from Fibrous and Liquid Rumen Fractions of Dairy Cows. (English)

1 reference

2 March 2018

Edoardo Saccenti

6

0 references

Hauke Smidt

object named as

Hauke Smidt

8

0 references

author name string

Jueeli D Vaidya

1

1 reference

2 March 2018

Bartholomeus van den Bogert

2

1 reference

2 March 2018

Joan E Edwards

3

1 reference

2 March 2018

Jos Boekhorst

4

1 reference

2 March 2018

Sanne van Gastelen

5

1 reference

2 March 2018

Caroline M Plugge

7

1 reference

2 March 2018

publication date

31 January 2018

1 reference

2 March 2018

Frontiers in Microbiology

published in

1 reference

2 March 2018

volume

9

1 reference

2 March 2018

page(s)

92

1 reference

2 March 2018

Creative Commons Attribution 4.0 International

copyright license

start time

31 January 2018

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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22 May 2018

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Effect of DNA extraction methods and sampling techniques on the apparent structure of cow and sheep rumen microbial communities

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Comparison of DNA extraction methods in analysis of salivary bacterial communities

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Diversity of human small intestinal Streptococcus and Veillonella populations

22 May 2018

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Next generation sequencing to define prokaryotic and fungal diversity in the bovine rumen

22 May 2018

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"Methanoplasmatales," Thermoplasmatales-related archaea in termite guts and other environments, are the seventh order of methanogens

22 May 2018

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A proposed taxonomy of anaerobic fungi (class neocallimastigomycetes) suitable for large-scale sequence-based community structure analysis

22 May 2018

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Bioreactor performance and quantitative analysis of methanogenic and bacterial community dynamics in microbial electrolysis cells during large temperature fluctuations

22 May 2018

1 reference

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Microbiome analysis of dairy cows fed pasture or total mixed ration diets.

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5797766

Microarray analysis and barcoded pyrosequencing provide consistent microbial profiles depending on the source of human intestinal samples

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5797766

Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5797766

Novel primers for 16S rRNA-based archaeal community analyses in environmental samples

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5797766

Phylogenetic and metabolic diversity of bacteria associated with cystic fibrosis.

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5797766

Phylogenetic diversity and community structure of anaerobic gut fungi (phylum Neocallimastigomycota) in ruminant and non-ruminant herbivores

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5797766

QIIME allows analysis of high-throughput community sequencing data

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5797766

Assessment of the microbial ecology of ruminal methanogens in cattle with different feed efficiencies

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5797766

Diversity and activity of enriched ruminal cultures of anaerobic fungi and methanogens grown together on lignocellulose in consecutive batch culture

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5797766

Structure of the archaeal community of the rumen

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5797766

Error-correcting barcoded primers for pyrosequencing hundreds of samples in multiplex

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5797766

Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5797766

Rumen anaerobic fungi of cattle and sheep

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5797766

Comparison of six DNA extraction methods for recovery of fungal DNA as assessed by quantitative PCR.

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5797766

16S rDNA library-based analysis of ruminal bacterial diversity

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5797766

Phylogenetic analysis of ribosomal RNA operons from uncultivated coastal marine bacterioplankton

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5797766

Quantitative analysis of small-subunit rRNA genes in mixed microbial populations via 5'-nuclease assays

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5797766

The domain-specific probe EUB338 is insufficient for the detection of all Bacteria: development and evaluation of a more comprehensive probe set.

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5797766

Microbial diversity in a hydrocarbon- and chlorinated-solvent-contaminated aquifer undergoing intrinsic bioremediation

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5797766

Microbial rumen fermentation

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5797766

The rumen flagellate Callimastix frontalis: does sequestration occur?

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5797766

Basic local alignment search tool

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5797766

Influence of hydrogen-consuming bacteria on cellulose degradation by anaerobic fungi.

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5797766

Effects of microbial synergism on fibre digestion in the rumen

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5797766

The Rumen Flagellate Piromonas communis: Its Life-history and Invasion of Plant Material in the Rumen

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5797766

Studies on the Rumen Flagellate Sphaeromonas communis

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5797766

Studies on the Rumen Flagellate Neocallimastix frontalis

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5797766

Exploring the methanogen and bacterial communities of rumen environments: solid adherent, fluid and epimural.

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5797766

Enteric methane production, rumen volatile fatty acid concentrations, and milk fatty acid composition in lactating Holstein-Friesian cows fed grass silage- or corn silage-based diets.

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5797766

Effect of DNA extraction and sample preservation method on rumen bacterial population.

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5797766

Evaluation of DNA extraction methods of rumen microbial populations

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5797766

The UNITE database for molecular identification of fungi--recent updates and future perspectives.

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5797766

Dynamics of initial colonization of nonconserved perennial ryegrass by anaerobic fungi in the bovine rumen.

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5797766

Isolation of DNA from bacterial samples of the human gastrointestinal tract.

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5797766

Group-specific primer and probe sets to detect methanogenic communities using quantitative real-time polymerase chain reaction.

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5797766

Improved extraction of PCR-quality community DNA from digesta and fecal samples

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5797766

Effect of coculture of anaerobic fungi isolated from ruminants and non-ruminants with methanogenic bacteria on cellulolytic and xylanolytic enzyme activities

14 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/29445366

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Isolation of natural cultures of anaerobic fungi and indigenously associated methanogens from herbivores and their bioconversion of lignocellulosic materials to methane

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/29445366

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Multivariate Analysis of Ecological Data using CANOCO 5

1 reference

24 May 2022

https://opencitations.net/index/coci/api/v1/citations/10.1017/CBO9781139627061

Identifiers

DOI

10.3389/FMICB.2018.00092

1 reference

2 March 2018

PMCID

5797766

1 reference

2 March 2018

PubMed ID

29445366

1 reference

2 March 2018