(Q50319620)

3 March 2018

title

Use of deep neural network ensembles to identify embryonic-fetal transition markers: repression of COX7A1 in embryonic and cancer cells. (English)

1 reference

3 March 2018

0 references

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Andrey Alekseenko

11

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Alex Zhavoronkov

23

object named as

Alex Zhavoronkov

1 reference

3 March 2018

Alex Aliper

9

object named as

Alex Aliper

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3 March 2018

15

Artem Artemov

1 reference

3 March 2018

2

Ivan Labat

1 reference

3 March 2018

8

Eugene Makarev

1 reference

3 March 2018

17

Polina Mamoshina

1 reference

3 March 2018

22

Mikhail Korzinkin

1 reference

3 March 2018

Hal Sternberg

3

1 reference

3 March 2018

Dana Larocca

4

1 reference

3 March 2018

Igor Nasonkin

5

1 reference

3 March 2018

Ratnesh Singh

7

1 reference

3 March 2018

Andrey Kazennov

10

1 reference

3 March 2018

Nikolai Shuvalov

12

1 reference

3 March 2018

Evgenia Cheskidova

13

1 reference

3 March 2018

Aleksandr Alekseev

14

1 reference

3 March 2018

Evgeny Putin

16

1 reference

3 March 2018

Nikita Pryanichnikov

18

1 reference

3 March 2018

Jacob Larocca

19

1 reference

3 March 2018

Karen Copeland

20

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3 March 2018

Evgeny Izumchenko

21

1 reference

3 March 2018

Michael D West

1

1 reference

5 May 2018

Karen B Chapman

6

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5 May 2018

language of work or name

English

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publication date

28 December 2017

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3 March 2018

published in

Oncotarget

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3 March 2018

volume

9

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3 March 2018

issue

8

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3 March 2018

page(s)

7796-7811

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3 March 2018

describes a project that uses

scikit-learn

object named as

scikit-learn

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

scikit-learn

0 references

cites work

An Additive Effect of Promoting Thermogenic Gene Expression in Mice Adipose-Derived Stromal Vascular Cells by Combination of Rosiglitazone and CL316,243.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5814259

Downregulation of cytochrome c oxidase subunit 7A1 expression is important in enhancing cell proliferation in adenocarcinoma cells

22 May 2018

1 reference

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In silico Pathway Activation Network Decomposition Analysis (iPANDA) as a method for biomarker development.

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5814259

Applications of Deep Learning in Biomedicine

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5814259

A deep learning framework for modeling structural features of RNA-binding protein targets

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5814259

Integrative Data Analysis of Multi-Platform Cancer Data with a Multimodal Deep Learning Approach

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5814259

Quantifying signaling pathway activation to monitor the quality of induced pluripotent stem cells

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5814259

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5814259

The OncoFinder algorithm for minimizing the errors introduced by the high-throughput methods of transcriptome analysis

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5814259

Deep convolutional neural networks for annotating gene expression patterns in the mouse brain

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5814259

Analysing human neural stem cell ontogeny by consecutive isolation of Notch active neural progenitors

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5814259

A Deep Learning Network Approach to ab initio Protein Secondary Structure Prediction

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5814259

Scarless wound healing: chasing the holy grail.

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5814259

Deep learning in neural networks: an overview

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5814259

Signaling pathways activation profiles make better markers of cancer than expression of individual genes.

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5814259

CellNet: network biology applied to stem cell engineering

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5814259

Deep learning of the tissue-regulated splicing code

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5814259

Regenerative healing, scar-free healing and scar formation across the species: current concepts and future perspectives.

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5814259

The Warburg effect in tumor progression: mitochondrial oxidative metabolism as an anti-metastasis mechanism

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5814259

Lin28 enhances tissue repair by reprogramming cellular metabolism

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5814259

Stem cell metabolism in tissue development and aging

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5814259

Origins and implications of pluripotent stem cell variability and heterogeneity

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5814259

HIF1α induced switch from bivalent to exclusively glycolytic metabolism during ESC-to-EpiSC/hESC transition

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5814259

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5814259

Switching from aerobic glycolysis to oxidative phosphorylation modulates the sensitivity of mantle cell lymphoma cells to TRAIL.

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5814259

Mice deleted for heart-type cytochrome c oxidase subunit 7a1 develop dilated cardiomyopathy.

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5814259

Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications.

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5814259

Progress in understanding reprogramming to the induced pluripotent state

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5814259

Tackling the widespread and critical impact of batch effects in high-throughput data

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5814259

Lin28a transgenic mice manifest size and puberty phenotypes identified in human genetic association studies

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5814259

Frozen robust multiarray analysis (fRMA).

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5814259

Diabetes--role of epigenetics, genetics, and physiological factors

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5814259

Lin28 promotes transformation and is associated with advanced human malignancies

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5814259

Genetic variation in LIN28B is associated with the timing of puberty

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5814259

lumi: a pipeline for processing Illumina microarray

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5814259

The ACTCellerate initiative: large-scale combinatorial cloning of novel human embryonic stem cell derivatives

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5814259

Bridging the regeneration gap: genetic insights from diverse animal models

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5814259

Induction of pluripotent stem cells from mouse embryonic and adult fibroblast cultures by defined factors

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5814259

Transcriptional profiling of the developmentally important signalling pathways in human embryonic stem cells.

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5814259

On the Origin of Cancer Cells

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5814259

Mitochondrial proteome: altered cytochrome c oxidase subunit levels in prostate cancer

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5814259

"Stemness": transcriptional profiling of embryonic and adult stem cells

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5814259

Structural organization and transcription regulation of nuclear genes encoding the mammalian cytochrome c oxidase complex

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5814259

Specific association of human telomerase activity with immortal cells and cancer

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5814259

Sequence of a cDNA specifying subunit VIIa of human cytochrome c oxidase

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5814259

Tissue-specific expression and chromosome assignment of genes specifying two isoforms of subunit VIIa of human cytochrome c oxidase

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5814259

Cold exposure induces the acquisition of brown adipocyte gene expression profiles in cattle inguinal fat normalized with a new set of reference genes for qRT-PCR.

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5814259

Deep Learning for Drug-Induced Liver Injury

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5814259

lncRNA-MFDL: identification of human long non-coding RNAs by fusing multiple features and using deep learning

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5814259

Muscle inflammatory signaling in response to 9 days of physical inactivity in young men with low compared with normal birth weight

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5814259

Cells die with increased cytosolic ATP during apoptosis: a bioluminescence study with intracellular luciferase

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5814259

Ontogeny of the skin and the transition from scar-free to scarring phenotype during wound healing in the pouch young of a marsupial, Monodelphis domestica

14 August 2018

1 reference

12 December 2020

Stem cells. 'Stemness' genes still elusive

1 reference

12 December 2020

Cytochrome C oxidase activity and oxygen tolerance

1 reference

12 December 2020

On the design and analysis of gene expression studies in human populations

1 reference

12 December 2020

10.18632/ONCOTARGET.23748

Identifiers

DOI

1 reference

5 May 2018

PMCID

5814259

1 reference

3 March 2018

PubMed ID

29487692

1 reference

5 May 2018