(Q50729299)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26797600%20AND%20SRC:MED&resulttype=core&format=json

5 March 2020

title

iPPBS-Opt: A Sequence-Based Ensemble Classifier for Identifying Protein-Protein Binding Sites by Optimizing Imbalanced Training Datasets (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26797600%20AND%20SRC:MED&resulttype=core&format=json

5 March 2020

1 reference

3

Xuan Xiao

1 reference

18 March 2018

5

Kuo-Chen Chou

1 reference

18 March 2018

Jianhua Jia

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26797600%20AND%20SRC:MED&resulttype=core&format=json

5 March 2020

Zi Liu

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26797600%20AND%20SRC:MED&resulttype=core&format=json

5 March 2020

Bingxiang Liu

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26797600%20AND%20SRC:MED&resulttype=core&format=json

5 March 2020

Xuan Xiao

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26797600%20AND%20SRC:MED&resulttype=core&format=json

5 March 2020

Kuo-Chen Chou

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26797600%20AND%20SRC:MED&resulttype=core&format=json

5 March 2020

language of work or name

English

0 references

publication date

19 January 2016

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26797600%20AND%20SRC:MED&resulttype=core&format=json

5 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26797600%20AND%20SRC:MED&resulttype=core&format=json

5 March 2020

volume

21

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26797600%20AND%20SRC:MED&resulttype=core&format=json

5 March 2020

issue

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26797600%20AND%20SRC:MED&resulttype=core&format=json

5 March 2020

page(s)

E95

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26797600%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution 4.0 International

5 March 2020

copyright license

start time

19 January 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

Predicting protein-protein interactions from sequences in a hybridization space

1 reference

https://api.crossref.org/works/10.3390%2FMOLECULES21010095

Group 9 organometallic compounds for therapeutic and bioanalytical applications.

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FMOLECULES21010095

Bioactive luminescent transition-metal complexes for biomedical applications

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FMOLECULES21010095

Luminescent detection of DNA-binding proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FMOLECULES21010095

DNA-binding small molecules as inhibitors of transcription factors

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FMOLECULES21010095

Structural bioinformatics and its impact to biomedical science

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FMOLECULES21010095

Prediction of protein-protein interaction sites using an ensemble method

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FMOLECULES21010095

Sequence-based prediction of protein interaction sites with an integrative method

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FMOLECULES21010095

Some remarks on protein attribute prediction and pseudo amino acid composition

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FMOLECULES21010095

iCTX-type: a sequence-based predictor for identifying the types of conotoxins in targeting ion channels

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FMOLECULES21010095

iPro54-PseKNC: a sequence-based predictor for identifying sigma-54 promoters in prokaryote with pseudo k-tuple nucleotide composition

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FMOLECULES21010095

iDNA-Prot|dis: identifying DNA-binding proteins by incorporating amino acid distance-pairs and reduced alphabet profile into the general pseudo amino acid composition

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FMOLECULES21010095

iNitro-Tyr: prediction of nitrotyrosine sites in proteins with general pseudo amino acid composition

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FMOLECULES21010095

Identification of DNA-binding proteins by incorporating evolutionary information into pseudo amino acid composition via the top-n-gram approach

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FMOLECULES21010095

Identification of microRNA precursor with the degenerate K-tuple or Kmer strategy

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FMOLECULES21010095

iRNA-Methyl: Identifying N(6)-methyladenosine sites using pseudo nucleotide composition.

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FMOLECULES21010095

iEnhancer-2L: a two-layer predictor for identifying enhancers and their strength by pseudo k-tuple nucleotide composition

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FMOLECULES21010095

A two-stage classifier for identification of protein-protein interface residues.

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FMOLECULES21010095

Predicted protein-protein interaction sites from local sequence information.

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FMOLECULES21010095

Principles of protein-protein interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FMOLECULES21010095

Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FMOLECULES21010095

PSAIA - protein structure and interaction analyzer

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FMOLECULES21010095

A new strategy for protein interface identification using manifold learning method.

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FMOLECULES21010095

Recent progress in protein subcellular location prediction

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FMOLECULES21010095

Prediction of signal peptides using scaled window

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FMOLECULES21010095

Signal-CF: a subsite-coupled and window-fusing approach for predicting signal peptides.

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FMOLECULES21010095

iSNO-PseAAC: predict cysteine S-nitrosylation sites in proteins by incorporating position specific amino acid propensity into pseudo amino acid composition

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FMOLECULES21010095

iSNO-AAPair: incorporating amino acid pairwise coupling into PseAAC for predicting cysteine S-nitrosylation sites in proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FMOLECULES21010095

iMethyl-PseAAC: identification of protein methylation sites via a pseudo amino acid composition approach

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FMOLECULES21010095

iUbiq-Lys: prediction of lysine ubiquitination sites in proteins by extracting sequence evolution information via a gray system model.

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FMOLECULES21010095

iHyd-PseAAC: predicting hydroxyproline and hydroxylysine in proteins by incorporating dipeptide position-specific propensity into pseudo amino acid composition

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FMOLECULES21010095

Prediction of human immunodeficiency virus protease cleavage sites in proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FMOLECULES21010095

Prediction of protein cellular attributes using pseudo-amino acid composition

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FMOLECULES21010095

An optimization approach to predicting protein structural class from amino acid composition

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FMOLECULES21010095

Predicting cleavability of peptide sequences by HIV protease via correlation-angle approach

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FMOLECULES21010095

Bioinformatical analysis of G-protein-coupled receptors.

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FMOLECULES21010095

Boosting classifier for predicting protein domain structural class.

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FMOLECULES21010095

Fuzzy KNN for predicting membrane protein types from pseudo-amino acid composition.

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FMOLECULES21010095

A top-down approach to enhance the power of predicting human protein subcellular localization: Hum-mPLoc 2.0

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FMOLECULES21010095

SLLE for predicting membrane protein types.

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FMOLECULES21010095

iDNA-Prot: identification of DNA binding proteins using random forest with grey model

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FMOLECULES21010095

iGPCR-drug: a web server for predicting interaction between GPCRs and drugs in cellular networking

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FMOLECULES21010095

iLoc-Virus: a multi-label learning classifier for identifying the subcellular localization of virus proteins with both single and multiple sites

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FMOLECULES21010095

Pse-in-One: a web server for generating various modes of pseudo components of DNA, RNA, and protein sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FMOLECULES21010095

Using amphiphilic pseudo amino acid composition to predict enzyme subfamily classes

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FMOLECULES21010095

propy: a tool to generate various modes of Chou's PseAAC.

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FMOLECULES21010095

Prediction of GABAA receptor proteins using the concept of Chou's pseudo-amino acid composition and support vector machine

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FMOLECULES21010095

Chou's pseudo amino acid composition improves sequence-based antifreeze protein prediction

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FMOLECULES21010095

Predicting anticancer peptides with Chou's pseudo amino acid composition and investigating their mutagenicity via Ames test

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FMOLECULES21010095

Identifying bacterial virulent proteins by fusing a set of classifiers based on variants of Chou's pseudo amino acid composition and on evolutionary information

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FMOLECULES21010095

Discriminating outer membrane proteins with Fuzzy K-nearest Neighbor algorithms based on the general form of Chou's PseAAC.

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FMOLECULES21010095

PseAAC-General: fast building various modes of general form of Chou's pseudo-amino acid composition for large-scale protein datasets

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FMOLECULES21010095

Impacts of bioinformatics to medicinal chemistry

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FMOLECULES21010095

Molecular science for drug development and biomedicine

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FMOLECULES21010095

iRSpot-TNCPseAAC: identify recombination spots with trinucleotide composition and pseudo amino acid components

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FMOLECULES21010095

iRSpot-PseDNC: identify recombination spots with pseudo dinucleotide composition

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FMOLECULES21010095

iNuc-PseKNC: a sequence-based predictor for predicting nucleosome positioning in genomes with pseudo k-tuple nucleotide composition

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FMOLECULES21010095

PseKNC: a flexible web server for generating pseudo K-tuple nucleotide composition.

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FMOLECULES21010095

repDNA: a Python package to generate various modes of feature vectors for DNA sequences by incorporating user-defined physicochemical properties and sequence-order effects

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FMOLECULES21010095

PseAAC-Builder: a cross-platform stand-alone program for generating various special Chou's pseudo-amino acid compositions

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FMOLECULES21010095

Prediction of protein antigenic determinants from amino acid sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FMOLECULES21010095

Prediction of the amount of secondary structure in a globular protein from its aminoacid composition

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FMOLECULES21010095

Amino acid difference formula to help explain protein evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FMOLECULES21010095

The structural dependence of amino acid hydrophobicity parameters

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FMOLECULES21010095

Hydrophobicity of amino acid residues in globular proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FMOLECULES21010095

Biophysical aspects of neutron scattering from vibrational modes of proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FMOLECULES21010095

Insight into the molecular switch mechanism of human Rab5a from molecular dynamics simulations

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FMOLECULES21010095

Molecular dynamics studies on the interactions of PTP1B with inhibitors: from the first phosphate-binding site to the second one.

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FMOLECULES21010095

Low-frequency resonance and cooperativity of hemoglobin.

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FMOLECULES21010095

Insights from studying the mutation-induced allostery in the M2 proton channel by molecular dynamics

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FMOLECULES21010095

The biological functions of low-frequency vibrations (phonons). VI. A possible dynamic mechanism of allosteric transition in antibody molecules.

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FMOLECULES21010095

Structure and mechanism of the M2 proton channel of influenza A virus

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FMOLECULES21010095

Collective motion in DNA and its role in drug intercalation

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FMOLECULES21010095

Solitary wave dynamics as a mechanism for explaining the internal motion during microtubule growth

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FMOLECULES21010095

Low-frequency collective motion in biomacromolecules and its biological functions

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FMOLECULES21010095

Low-frequency Fourier spectrum for predicting membrane protein types

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FMOLECULES21010095

A Theory for Multiresolution Signal Decomposition: The Wavelet Representation

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FMOLECULES21010095

iDrug-Target: predicting the interactions between drug compounds and target proteins in cellular networking via benchmark dataset optimization approach

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FMOLECULES21010095

iDNA-Methyl: identifying DNA methylation sites via pseudo trinucleotide composition.

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FMOLECULES21010095

Monte Carlo simulation studies on the prediction of protein folding types from amino acid composition

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FMOLECULES21010095

AFP-Pred: A random forest approach for predicting antifreeze proteins from sequence-derived properties.

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FMOLECULES21010095

RSARF: prediction of residue solvent accessibility from protein sequence using random forest method

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FMOLECULES21010095

Identifying Important Risk Factors for Survival in Kidney Graft Failure Patients Using Random Survival Forests

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FMOLECULES21010095

Euk-mPLoc: a fusion classifier for large-scale eukaryotic protein subcellular location prediction by incorporating multiple sites

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FMOLECULES21010095

Predicting eukaryotic protein subcellular location by fusing optimized evidence-theoretic K-Nearest Neighbor classifiers

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FMOLECULES21010095

QuatIdent: a web server for identifying protein quaternary structural attribute by fusing functional domain and sequential evolution information

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FMOLECULES21010095

Prediction of linear B-cell epitopes using amino acid pair antigenicity scale.

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FMOLECULES21010095

Using subsite coupling to predict signal peptides

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FMOLECULES21010095

iNuc-PhysChem: a sequence-based predictor for identifying nucleosomes via physicochemical properties

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FMOLECULES21010095

iLoc-Hum: using the accumulation-label scale to predict subcellular locations of human proteins with both single and multiple sites.

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FMOLECULES21010095

iLoc-Animal: a multi-label learning classifier for predicting subcellular localization of animal proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FMOLECULES21010095

iAMP-2L: a two-level multi-label classifier for identifying antimicrobial peptides and their functional types.

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FMOLECULES21010095

Some remarks on predicting multi-label attributes in molecular biosystems

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FMOLECULES21010095

Some insights into protein structural class prediction

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FMOLECULES21010095

Prediction and classification of protein subcellular location-sequence-order effect and pseudo amino acid composition

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FMOLECULES21010095

Gram-positive and Gram-negative protein subcellular localization by incorporating evolutionary-based descriptors into Chou׳s general PseAAC.

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FMOLECULES21010095

Discrimination of acidic and alkaline enzyme using Chou's pseudo amino acid composition in conjunction with probabilistic neural network model

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FMOLECULES21010095

Prediction of β-lactamase and its class by Chou's pseudo-amino acid composition and support vector machine

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FMOLECULES21010095

Euk-PLoc: an ensemble classifier for large-scale eukaryotic protein subcellular location prediction

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FMOLECULES21010095

Hum-PLoc: a novel ensemble classifier for predicting human protein subcellular localization

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FMOLECULES21010095

Graphical rules for enzyme-catalysed rate laws

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FMOLECULES21010095

Kinetic studies with the non-nucleoside HIV-1 reverse transcriptase inhibitor U-88204E.

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FMOLECULES21010095

Graphic rule for drug metabolism systems

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FMOLECULES21010095

The disposition of the LZCC protein residues in wenxiang diagram provides new insights into the protein-protein interaction mechanism

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FMOLECULES21010095

An introduction to ROC analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FMOLECULES21010095

Pseudo nucleotide composition or PseKNC: an effective formulation for analyzing genomic sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FMOLECULES21010095

Prediction of the tertiary structure of a caspase-9/inhibitor complex

21 January 2018

1 reference

12 December 2020

Binding mechanism of coronavirus main proteinase with ligands and its implication to drug design against SARS.

1 reference

12 December 2020

2D-MH: A web-server for generating graphic representation of protein sequences based on the physicochemical properties of their constituent amino acids

1 reference

12 December 2020

Graphic rules in steady and non-steady state enzyme kinetics

1 reference

12 December 2020

Prediction of Protein Structural Classes

1 reference

12 December 2020

A vectorized sequence-coupling model for predicting HIV protease cleavage sites in proteins.

1 reference

12 December 2020

An analysis of protein folding type prediction by seed-propagated sampling and jackknife test

1 reference

12 December 2020

Prediction of the tertiary structure and substrate binding site of caspase-8

1 reference

12 December 2020

10.3390/MOLECULES21010095

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26797600%20AND%20SRC:MED&resulttype=core&format=json

5 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26797600%20AND%20SRC:MED&resulttype=core&format=json

5 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26797600%20AND%20SRC:MED&resulttype=core&format=json