(Q51033402)

27 March 2018

title

Two-phase importance sampling for inference about transmission trees. (English)

1 reference

27 March 2018

Claire Chewapreecha

2

0 references

Jukka Sirén

Jukka Sirén

3

0 references

Paul Turner

Paul Turner

5

0 references

Stephen D Bentley

6

Stephen D Bentley

1 reference

27 March 2018

Jukka Corander

7

Jukka Corander

1 reference

27 March 2018

Claudia Turner

4

Claudia Turner

1 reference

27 March 2018

author name string

Elina Numminen

1

1 reference

27 March 2018

publication date

1 November 2014

1 reference

27 March 2018

Proceedings of the Royal Society B

published in

1 reference

27 March 2018

volume

281

1 reference

27 March 2018

issue

1794

1 reference

27 March 2018

page(s)

20141324

1 reference

27 March 2018

Simultaneous reconstruction of evolutionary history and epidemiological dynamics from viral sequences with the birth-death SIR model

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4211445

Dense genomic sampling identifies highways of pneumococcal recombination

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4211445

Exact vs. approximate computation: reconciling different estimates of Mycobacterium tuberculosis epidemiological parameters

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4211445

Using an epidemiological model for phylogenetic inference reveals density dependence in HIV transmission

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4211445

Relating phylogenetic trees to transmission trees of infectious disease outbreaks

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4211445

Estimating the transmission dynamics of Streptococcus pneumoniae from strain prevalence data

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4211445

How the dynamics and structure of sexual contact networks shape pathogen phylogenies

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4211445

Phylodynamic inference and model assessment with approximate bayesian computation: influenza as a case study

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4211445

Birth-death skyline plot reveals temporal changes of epidemic spread in HIV and hepatitis C virus (HCV)

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4211445

A Bayesian inference framework to reconstruct transmission trees using epidemiological and genetic data

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4211445

A longitudinal study of Streptococcus pneumoniae carriage in a cohort of infants and their mothers on the Thailand-Myanmar border

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4211445

Inferring epidemic contact structure from phylogenetic trees

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4211445

Is network clustering detectable in transmission trees?

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4211445

Rapid pneumococcal evolution in response to clinical interventions

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4211445

Contact heterogeneity and phylodynamics: how contact networks shape parasite evolutionary trees

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4211445

Superspreading and the effect of individual variation on disease emergence

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4211445

Dietary assessment of refugees living in camps: a case study of Mae La Camp, Thailand

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4211445

HIV with contact tracing: a case study in approximate Bayesian computation.

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4211445

Unravelling transmission trees of infectious diseases by combining genetic and epidemiological data

14 August 2018

1 reference

Crossref

https://api.crossref.org/works/10.1098%2FRSPB.2014.1324

21 January 2018

Identifiers

DOI

10.1098/RSPB.2014.1324

1 reference

27 March 2018

PMCID

4211445

1 reference

27 March 2018

PubMed ID

25253455

1 reference

27 March 2018