(Q51418660)

http://europepmc.org/abstract/PMC/5830443

5 April 2018

title

Sheep genome functional annotation reveals proximal regulatory elements contributed to the evolution of modern breeds. (English)

1 reference

http://europepmc.org/abstract/PMC/5830443

5 April 2018

author

Miguel Perez-Enciso

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29491421%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

François Pompanon

15

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29491421%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

Marina N Sanchez

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29491421%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

Sean M. McWilliam

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29491421%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

Laercio R Porto-Neto

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29491421%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

Toni Reverter-Gomez

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29491421%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

Rudiger Brauning

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29491421%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

Shannon M. Clarke

10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29491421%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

Saeid Naderi

13

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29491421%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

Hamid-Reza Rezaei

14

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29491421%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

Kim C Worley

17

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29491421%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

Hans D. Daetwyler

22

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29491421%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

16

Pierre Taberlet

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29491421%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

19

Donna M Muzny

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29491421%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

23

James Kijas

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29491421%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

5

Ross Tellam

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29491421%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

12

Wahid Zamani

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29491421%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

18

Richard A Gibbs

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29491421%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

author name string

Quan Nguyen

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29491421%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

Tony Vuocolo

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29491421%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

Alan McCulloch

11

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29491421%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

Shalini N Jhangiani

20

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29491421%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

Noelle Cockett

21

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29491421%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

language of work or name

English

0 references

publication date

28 February 2018

1 reference

http://europepmc.org/abstract/PMC/5830443

5 April 2018

published in

Nature Communications

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29491421%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

volume

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29491421%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

issue

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29491421%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

page(s)

859

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29491421%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution 4.0 International

5 June 2020

copyright license

start time

28 February 2018

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

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A Point Mutation in Suppressor of Cytokine Signalling 2 (Socs2) Increases the Susceptibility to Inflammation of the Mammary Gland while Associated with Higher Body Weight and Size and Higher Milk Production in a Sheep Model.

22 May 2018

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22 May 2018

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22 May 2018

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22 May 2018

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22 May 2018

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Adaptation and possible ancient interspecies introgression in pigs identified by whole-genome sequencing

22 May 2018

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Prehistoric genomes reveal the genetic foundation and cost of horse domestication

22 May 2018

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Mouse regulatory DNA landscapes reveal global principles of cis-regulatory evolution

22 May 2018

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22 May 2018

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BEDTools: The Swiss-Army Tool for Genome Feature Analysis.

22 May 2018

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Rabbit genome analysis reveals a polygenic basis for phenotypic change during domestication

22 May 2018

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Genomic analysis reveals selection for Asian genes in European pigs following human-mediated introgression

22 May 2018

1 reference

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The sheep genome illuminates biology of the rumen and lipid metabolism

22 May 2018

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Regulatory and coding genome regions are enriched for trait associated variants in dairy and beef cattle

22 May 2018

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A molecular basis for classic blond hair color in Europeans

22 May 2018

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Current perspectives and the future of domestication studies

22 May 2018

1 reference

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Establishing the validity of domestication genes using DNA from ancient chickens

22 May 2018

1 reference

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Evolution of transcription factor binding in metazoans - mechanisms and functional implications

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5830443

Contributions of protein-coding and regulatory change to adaptive molecular evolution in murid rodents

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5830443

A systems biology approach using metabolomic data reveals genes and pathways interacting to modulate divergent growth in cattle

22 May 2018

1 reference

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Cooperativity and rapid evolution of cobound transcription factors in closely related mammals

22 May 2018

1 reference

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Detection of selective sweeps in cattle using genome-wide SNP data

22 May 2018

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Genome-wide inference of natural selection on human transcription factor binding sites

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5830443

Signatures of diversifying selection in European pig breeds.

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5830443

Pleiotropic effects of coat colour-associated mutations in humans, mice and other mammals

22 May 2018

1 reference

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Gene expression drives local adaptation in humans

22 May 2018

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SCFFBXL3 ubiquitin ligase targets cryptochromes at their cofactor pocket

22 May 2018

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Analyses of pig genomes provide insight into porcine demography and evolution

22 May 2018

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Strong signatures of selection in the domestic pig genome

22 May 2018

1 reference

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Linking disease associations with regulatory information in the human genome

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5830443

An integrated encyclopedia of DNA elements in the human genome

22 May 2018

1 reference

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Mammalian sexual dimorphism

22 May 2018

1 reference

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Signatures of selection in the genomes of commercial and non-commercial chicken breeds

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5830443

Genome-wide analysis of the world's sheep breeds reveals high levels of historic mixture and strong recent selection

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5830443

Identification of genomic regions associated with phenotypic variation between dog breeds using selection mapping

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5830443

The variant call format and VCFtools

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5830443

A framework for variation discovery and genotyping using next-generation DNA sequencing data

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5830443

Gene expression differences among primates are associated with changes in a histone epigenetic modification

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5830443

GREAT improves functional interpretation of cis-regulatory regions

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5830443

Five-vertebrate ChIP-seq reveals the evolutionary dynamics of transcription factor binding

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5830443

Whole-genome resequencing reveals loci under selection during chicken domestication

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5830443

Genetic determinants of hair and eye colours in the Scottish and Danish populations.

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5830443

Adaptive evolution of pelvic reduction in sticklebacks by recurrent deletion of a Pitx1 enhancer

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5830443

Fast and accurate short read alignment with Burrows-Wheeler transform

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5830443

Revealing the history of sheep domestication using retrovirus integrations

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5830443

Model-based analysis of ChIP-Seq (MACS)

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5830443

Evo-Devo and an Expanding Evolutionary Synthesis: A Genetic Theory of Morphological Evolution

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5830443

A gene duplication affecting expression of the ovine ASIP gene is responsible for white and black sheep

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5830443

Genetic determinants of hair, eye and skin pigmentation in Europeans

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5830443

The locus of evolution: evo devo and the genetics of adaptation

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5830443

The after-hours mutant reveals a role for Fbxl3 in determining mammalian circadian period

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5830443

SCFFbxl3 controls the oscillation of the circadian clock by directing the degradation of cryptochrome proteins

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5830443

Circadian mutant Overtime reveals F-box protein FBXL3 regulation of cryptochrome and period gene expression

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5830443

The evolutionary significance of cis-regulatory mutations

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5830443

Five ovine mitochondrial lineages identified from sheep breeds of the near East

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5830443

In vivo enhancer analysis of human conserved non-coding sequences

22 May 2018

1 reference

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Documenting domestication: the intersection of genetics and archaeology

22 May 2018

1 reference

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Hearing silence: non-neutral evolution at synonymous sites in mammals

22 May 2018

1 reference

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The UCSC Genome Browser Database: update 2006

22 May 2018

1 reference

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Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5830443

Chance caught on the wing: cis-regulatory evolution and the origin of pigment patterns in Drosophila

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5830443

Active genes are tri-methylated at K4 of histone H3

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5830443

Evolution, consequences and future of plant and animal domestication

22 May 2018

1 reference

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Estimating the causal tissues for complex traits and diseases

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5830443

Genetic effects on gene expression across human tissues

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5830443

ESTIMATING F-STATISTICS FOR THE ANALYSIS OF POPULATION STRUCTURE.

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5830443

Short oestrous cycles in sheep during anoestrus involve defects in progesterone biosynthesis and luteal neovascularisation.

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5830443

Genomic analyses identify distinct patterns of selection in domesticated pigs and Tibetan wild boars

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5830443

Genome-wide analysis reveals artificial selection on coat colour and reproductive traits in Chinese domestic pigs

14 August 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FS41467-017-02809-1

inferred from DOI database lookup

7 January 2021

based on heuristic

Identifiers

DOI

10.1038/S41467-017-02809-1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29491421%20AND%20SRC:MED&resulttype=core&format=json

Dimensions Publication ID

5 June 2020

ADS bibcode

2018NatCo...9..859N

0 references

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29491421%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

PubMed publication ID

29491421

1 reference