(Q51433909)

5 April 2018

title

Predicting nucleosome positions in yeast: using the absolute frequency. (English)

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5 April 2018

Yusen Zhang

2

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author name string

Zhiqian Zhang

series ordinal

1

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5 April 2018

Ivan Gutman

series ordinal

3

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5 April 2018

publication date

1 January 2012

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5 April 2018

Journal of Biomolecular Structure and Dynamics

published in

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5 April 2018

volume

29

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5 April 2018

issue

5

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5 April 2018

page(s)

1081-1088

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5 April 2018

Solvent mediated interactions in the structure of the nucleosome core particle at 1.9 a resolution

cites work

1 reference

https://api.crossref.org/works/10.1080%2F073911012010525032

Crystal structure of the nucleosome core particle at 2.8 A resolution

21 January 2018

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Structural features of a phased nucleosome core particle

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Nucleosome positioning modulates accessibility of regulatory proteins to the mouse mammary tumor virus promoter

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Mapping nucleosome position at single base-pair resolution by using site-directed hydroxyl radicals

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A barrier nucleosome model for statistical positioning of nucleosomes throughout the yeast genome

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Chemotaxis in Escherichia coli: a molecular model for robust precise adaptation

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The DNA sequence-dependence of nucleosome positioning in vivo and in vitro

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DNA architecture, deformability, and nucleosome positioning

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Nucleosome positioning by sequence, state of the art and apparent finale

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Nucleosome positioning, nucleosome spacing and the nucleosome code

21 January 2018

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A structural perspective on the where, how, why, and what of nucleosome positioning

21 January 2018

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Structure-based analysis of DNA sequence patterns guiding nucleosome positioning in vitro

21 January 2018

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Sequence-dependent Kink-and-Slide deformations of nucleosomal DNA facilitated by histone arginines bound in the minor groove

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Electrostatic interactions between arginines and the minor groove in the nucleosome.

21 January 2018

1 reference

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Single-base resolution nucleosome mapping on DNA sequences

21 January 2018

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Nucleosome positioning pattern derived from oligonucleotide compositions of genomic sequences

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Sequence-dependent deformational anisotropy of chromatin DNA.

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Nucleosome positioning signals in genomic DNA

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Sequence periodicities in chicken nucleosome core DNA.

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A genomic code for nucleosome positioning

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Genomic sequence is highly predictive of local nucleosome depletion

21 January 2018

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nuScore: a web-interface for nucleosome positioning predictions

21 January 2018

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A measure of DNA sequence dissimilarity based on free energy of nearest-neighbor interaction.

21 January 2018

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A high-resolution atlas of nucleosome occupancy in yeast

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Prediction of nucleosome DNA formation potential and nucleosome positioning using increment of diversity combined with quadratic discriminant analysis.

21 January 2018

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The bending of DNA in nucleosomes and its wider implications

21 January 2018

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Nucleosomes will not form on double-stranded RNa or over poly(dA).poly(dT) tracts in recombinant DNA.

21 January 2018

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X-ray structure of a tetranucleosome and its implications for the chromatin fibre

21 January 2018

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TGGA repeats impair nucleosome formation.

21 January 2018

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Gene expression divergence in yeast is coupled to evolution of DNA-encoded nucleosome organization

21 January 2018

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Sequence specific cleavage of DNA by micrococcal nuclease

21 January 2018

1 reference

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High sequence specificity of micrococcal nuclease

21 January 2018

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Micrococcal nuclease as a DNA structural probe: its recognition sequences, their genomic distribution and correlation with DNA structure determinants.

21 January 2018

1 reference

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10.1080/073911012010525032

21 January 2018

Identifiers

DOI

1 reference

5 April 2018

1 reference

5 April 2018