(Q51614529)

8 April 2018

title

Coarse-grained model of nucleic acid bases. (English)

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4

Harold A Scheraga

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8 April 2018

3

Adam Liwo

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1

Maciej Maciejczyk

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8 April 2018

author name string

Aleksandar Spasic

series ordinal

2

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publication date

1 June 2010

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Journal of Computational Chemistry

published in

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8 April 2018

volume

31

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issue

8

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8 April 2018

page(s)

1644-1655

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8 April 2018

Molecular dynamic simulations of environment and sequence dependent DNA conformations: the development of the BMS nucleic acid force field and comparison with experimental results

cites work

1 reference

Crossref

https://api.crossref.org/works/10.1002%2FJCC.21448

A mezoscopic model of nucleic acids. Part 1. Lagrangian and quaternion molecular dynamics.

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1002%2FJCC.21448

A mezoscopic model of nucleic acids. Part 2. An effective potential energy function for DNA.

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1002%2FJCC.21448

Molecular dynamics simulation of nucleic acids

21 January 2018

1 reference

12 December 2020

Sequence effects in the melting and renaturation of short DNA oligonucleotides: structure and mechanistic pathways

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12 December 2020

A coarse grain model for DNA.

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12 December 2020

A standard reference frame for the description of nucleic acid base-pair geometry.

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12 December 2020

3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures

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12 December 2020

Generalized coarse-grained model based on point multipole and Gay-Berne potentials.

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12 December 2020

Recommendations for the presentation of NMR structures of proteins and nucleic acids

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12 December 2020

CHARMM: the biomolecular simulation program

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12 December 2020

Simulation and modeling of nucleic acid structure, dynamics and interactions

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12 December 2020

Electronic properties, hydrogen bonding, stacking, and cation binding of DNA and RNA bases

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12 December 2020

Statistical mechanics of a nonlinear model for DNA denaturation

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12 December 2020

Coarse-grained force field for the nucleosome from self-consistent multiscaling

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12 December 2020

Insights on protein-DNA recognition by coarse grain modelling

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12 December 2020

VMD: visual molecular dynamics

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12 December 2020

Theoretical methods for the simulation of nucleic acids.

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12 December 2020

A coarse-grained model for double-helix molecules in solution: spontaneous helix formation and equilibrium properties

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12 December 2020

Energetic coupling between DNA bending and base pair opening

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12 December 2020

Spatial configuration of polynucleotide chains. II. Conformational energies and the average dimensions of polyribonucleotides

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12 December 2020

Block-units method for conformational calculations of large nucleic acid chains. I. Block-units approximation of atomic structure and conformational energy of polynucleotides

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12 December 2020

Mechanical unfolding of RNA hairpins

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12 December 2020

Simulating DNA at low resolution

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12 December 2020

A mesoscale model of DNA and its renaturation

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12 December 2020

Polarizable Atomic Multipole Solutes in a Generalized Kirkwood Continuum

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12 December 2020

Identifiers

DOI

10.1002/JCC.21448

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8 April 2018

journals/jcc/MaciejczykSLS10

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

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8 April 2018