(Q51742989)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19334897%20AND%20SRC:MED&resulttype=core&format=json

25 January 2020

title

Identification of the protein folding transition state from molecular dynamics trajectories (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19334897%20AND%20SRC:MED&resulttype=core&format=json

25 January 2020

0 references

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19334897%20AND%20SRC:MED&resulttype=core&format=json

25 January 2020

author name string

A Caflisch

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19334897%20AND%20SRC:MED&resulttype=core&format=json

25 January 2020

language of work or name

English

0 references

publication date

1 March 2009

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19334897%20AND%20SRC:MED&resulttype=core&format=json

Journal of Chemical Physics

25 January 2020

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19334897%20AND%20SRC:MED&resulttype=core&format=json

25 January 2020

volume

130

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19334897%20AND%20SRC:MED&resulttype=core&format=json

25 January 2020

issue

12

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19334897%20AND%20SRC:MED&resulttype=core&format=json

25 January 2020

page(s)

125104

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19334897%20AND%20SRC:MED&resulttype=core&format=json

The Energy Landscapes and Motions of Proteins

25 January 2020

cites work

1 reference

Mapping the transition state and pathway of protein folding by protein engineering

21 January 2018

1 reference

Folding and unfolding of a photoswitchable peptide from picoseconds to microseconds.

21 January 2018

1 reference

The folding of hen lysozyme involves partially structured intermediates and multiple pathways

21 January 2018

1 reference

Characterization of the transition state of protein unfolding by use of molecular dynamics: chymotrypsin inhibitor 2

21 January 2018

1 reference

Constructing, verifying, and dissecting the folding transition state of chymotrypsin inhibitor 2 with all-atom simulations

21 January 2018

1 reference

Molecular dynamics simulations of protein folding from the transition state

21 January 2018

1 reference

Using path sampling to build better Markovian state models: predicting the folding rate and mechanism of a tryptophan zipper beta hairpin

21 January 2018

1 reference

One-dimensional free-energy profiles of complex systems: progress variables that preserve the barriers.

21 January 2018

1 reference

One-dimensional barrier-preserving free-energy projections of a beta-sheet miniprotein: new insights into the folding process

21 January 2018

1 reference

Commitment and nucleation in the protein G transition state

21 January 2018

1 reference

P versus Q: structural reaction coordinates capture protein folding on smooth landscapes

21 January 2018

1 reference

High temperature unfolding simulations of the TRPZ1 peptide

21 January 2018

1 reference

Folding simulations of a three-stranded antiparallel beta -sheet peptide

21 January 2018

1 reference

Three key residues form a critical contact network in a protein folding transition state

21 January 2018

1 reference

Formation of the folding nucleus of an SH3 domain investigated by loosely coupled molecular dynamics simulations

21 January 2018

1 reference

Diffusive reaction dynamics on invariant free energy profiles

21 January 2018

1 reference

Wordom: a program for efficient analysis of molecular dynamics simulations.

21 January 2018

1 reference

Hidden complexity of free energy surfaces for peptide (protein) folding

21 January 2018

1 reference

De novo design of a monomeric three-stranded antiparallel beta-sheet

21 January 2018

1 reference

Evaluation of a fast implicit solvent model for molecular dynamics simulations

21 January 2018

1 reference

CHARMM: A program for macromolecular energy, minimization, and dynamics calculations

21 January 2018

1 reference

The role of side-chain interactions in the early steps of aggregation: Molecular dynamics simulations of an amyloid-forming peptide from the yeast prion Sup35

21 January 2018

1 reference

Alpha-Helix folding in the presence of structural constraints.

21 January 2018

1 reference

Role of native topology investigated by multiple unfolding simulations of four SH3 domains

21 January 2018

1 reference

Coarse master equations for peptide folding dynamics.

21 January 2018

1 reference

Transition networks for modeling the kinetics of conformational change in macromolecules

21 January 2018

1 reference

Reaction coordinates of biomolecular isomerization

21 January 2018

1 reference

Reaction coordinates and rates from transition paths

21 January 2018

1 reference

A two-step nucleotide-flipping mechanism enables kinetic discrimination of DNA lesions by AGT

21 January 2018

1 reference

Automatic method for identifying reaction coordinates in complex systems.

21 January 2018

1 reference

ETNA: equilibrium transitions network and Arrhenius equation for extracting folding kinetics from REMD simulations.

21 January 2018

1 reference

On the transition coordinate for protein folding

21 January 2018

1 reference