(Q51816324)

English

"Hypothesis for the modern RNA world": a pervasive non-coding RNA-based genetic regulation is a prerequisite for the emergence of multicellular complexity.

scientific article published in December 2011

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scholarly article

1 reference

Europe PubMed Central

13 April 2018

http://europepmc.org/abstract/MED/22322874

"Hypothesis for the modern RNA world": a pervasive non-coding RNA-based genetic regulation is a prerequisite for the emergence of multicellular complexity. (English)

1 reference

Europe PubMed Central

13 April 2018

http://europepmc.org/abstract/MED/22322874

0 references

multicellularity

1 reference

based on heuristic

inferred from title

Peter F. Stadler

2

1 reference

Europe PubMed Central

13 April 2018

http://europepmc.org/abstract/MED/22322874

Irma Lozada-Chávez

1

object named as

Irma Lozada-Chávez

1 reference

Europe PubMed Central

13 April 2018

http://europepmc.org/abstract/MED/22322874

author name string

Sonja J Prohaska

3

1 reference

Europe PubMed Central

13 April 2018

http://europepmc.org/abstract/MED/22322874

publication date

1 December 2011

1 reference

Europe PubMed Central

13 April 2018

http://europepmc.org/abstract/MED/22322874

Origins of Life and Evolution of Biospheres

1 reference

Europe PubMed Central

13 April 2018

http://europepmc.org/abstract/MED/22322874

41

1 reference

Europe PubMed Central

13 April 2018

http://europepmc.org/abstract/MED/22322874

6

1 reference

Europe PubMed Central

13 April 2018

http://europepmc.org/abstract/MED/22322874

587-607

1 reference

Europe PubMed Central

13 April 2018

http://europepmc.org/abstract/MED/22322874

https://scigraph.springernature.com/pub.10.1007/s11084-011-9262-1

0 references

Reactive oxygen species and development in microbial eukaryotes.

1 reference

https://api.crossref.org/works/10.1007%2FS11084-011-9262-1

21 January 2018

Genome-wide evolutionary analysis of the noncoding RNA genes and noncoding DNA of Paramecium tetraurelia

1 reference

https://api.crossref.org/works/10.1007%2FS11084-011-9262-1

21 January 2018

Ancient animal microRNAs and the evolution of tissue identity

1 reference

https://api.crossref.org/works/10.1007%2FS11084-011-9262-1

21 January 2018

Evolutionary dynamics of prokaryotic transcriptional regulatory networks

1 reference

https://api.crossref.org/works/10.1007%2FS11084-011-9262-1

21 January 2018

MOSQUITO TRANSMISSION OF A RETICULUM CELL SARCOMA OF HAMSTERS

1 reference

https://api.crossref.org/works/10.1007%2FS11084-011-9262-1

21 January 2018

MicroRNAs prevent precocious gene expression and enable pattern formation during plant embryogenesis

1 reference

https://api.crossref.org/works/10.1007%2FS11084-011-9262-1

21 January 2018

Dating the tree of life

1 reference

https://api.crossref.org/works/10.1007%2FS11084-011-9262-1

21 January 2018

Dicer is essential for mouse development

1 reference

https://api.crossref.org/works/10.1007%2FS11084-011-9262-1

21 January 2018

Pervasive transcription constitutes a new level of eukaryotic genome regulation

1 reference

https://api.crossref.org/works/10.1007%2FS11084-011-9262-1

21 January 2018

Switching the light on plant riboswitches

1 reference

https://api.crossref.org/works/10.1007%2FS11084-011-9262-1

21 January 2018

The origins of multicellularity

1 reference

https://api.crossref.org/works/10.1007%2FS11084-011-9262-1

21 January 2018

Perspective: the size-complexity rule

1 reference

https://api.crossref.org/works/10.1007%2FS11084-011-9262-1

21 January 2018

Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses

1 reference

https://api.crossref.org/works/10.1007%2FS11084-011-9262-1

21 January 2018

Evolution of microRNA genes by inverted duplication of target gene sequences in Arabidopsis thaliana

1 reference

https://api.crossref.org/works/10.1007%2FS11084-011-9262-1

21 January 2018

High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes

1 reference

https://api.crossref.org/works/10.1007%2FS11084-011-9262-1

21 January 2018

Evolution and functional diversification of MIRNA genes

1 reference

https://api.crossref.org/works/10.1007%2FS11084-011-9262-1

21 January 2018

Chance and necessity: the evolution of morphological complexity and diversity

1 reference

https://api.crossref.org/works/10.1007%2FS11084-011-9262-1

21 January 2018

Control of alternative RNA splicing and gene expression by eukaryotic riboswitches

1 reference

https://api.crossref.org/works/10.1007%2FS11084-011-9262-1

21 January 2018

Genomic maps of long noncoding RNA occupancy reveal principles of RNA-chromatin interactions

1 reference

https://api.crossref.org/works/10.1007%2FS11084-011-9262-1

21 January 2018

The reality of pervasive transcription

1 reference

https://api.crossref.org/works/10.1007%2FS11084-011-9262-1

21 January 2018

T cell lineage choice and differentiation in the absence of the RNase III enzyme Dicer

1 reference

https://api.crossref.org/works/10.1007%2FS11084-011-9262-1

21 January 2018

The Ectocarpus genome and the independent evolution of multicellularity in brown algae

1 reference

https://api.crossref.org/works/10.1007%2FS11084-011-9262-1

21 January 2018

Non-coding RNAs: new players in eukaryotic biology

1 reference

https://api.crossref.org/works/10.1007%2FS11084-011-9262-1

21 January 2018

Structurally different alleles of the ath-MIR824 microRNA precursor are maintained at high frequency in Arabidopsis thaliana.

1 reference

https://api.crossref.org/works/10.1007%2FS11084-011-9262-1

21 January 2018

Shifts in metabolic scaling, production, and efficiency across major evolutionary transitions of life

1 reference

https://api.crossref.org/works/10.1007%2FS11084-011-9262-1

21 January 2018

MicroRNAs and the advent of vertebrate morphological complexity

1 reference

https://api.crossref.org/works/10.1007%2FS11084-011-9262-1

21 January 2018

The Xist RNA gene evolved in eutherians by pseudogenization of a protein-coding gene

1 reference

https://api.crossref.org/works/10.1007%2FS11084-011-9262-1

21 January 2018

Early origin of the bilaterian developmental toolkit

1 reference

https://api.crossref.org/works/10.1007%2FS11084-011-9262-1

21 January 2018

Analysis of genomic variation in non-coding elements using population-scale sequencing data from the 1000 Genomes Project

1 reference

https://api.crossref.org/works/10.1007%2FS11084-011-9262-1

21 January 2018

RNA maps reveal new RNA classes and a possible function for pervasive transcription

1 reference

https://api.crossref.org/works/10.1007%2FS11084-011-9262-1

21 January 2018

MicroRNAs regulate brain morphogenesis in zebrafish

1 reference

https://api.crossref.org/works/10.1007%2FS11084-011-9262-1

21 January 2018

Synergy between sequence and size in Large-scale genomics

1 reference

https://api.crossref.org/works/10.1007%2FS11084-011-9262-1

21 January 2018

The Evolution of Multicellularity: A Minor Major Transition?

1 reference

https://api.crossref.org/works/10.1007%2FS11084-011-9262-1

21 January 2018

Arthropod 7SK RNA.

1 reference

https://api.crossref.org/works/10.1007%2FS11084-011-9262-1

21 January 2018

Small RNAs originated from pseudogenes: cis- or trans-acting?

1 reference

https://api.crossref.org/works/10.1007%2FS11084-011-9262-1

21 January 2018

Phylogenomic analyses support the monophyly of Excavata and resolve relationships among eukaryotic "supergroups"

1 reference

https://api.crossref.org/works/10.1007%2FS11084-011-9262-1

21 January 2018

The RNaseIII enzyme Dicer is required for morphogenesis but not patterning of the vertebrate limb

1 reference

https://api.crossref.org/works/10.1007%2FS11084-011-9262-1

21 January 2018

The origin and evolution of model organisms

1 reference

https://api.crossref.org/works/10.1007%2FS11084-011-9262-1

21 January 2018

A molecular timescale of eukaryote evolution and the rise of complex multicellular life

1 reference

https://api.crossref.org/works/10.1007%2FS11084-011-9262-1

21 January 2018

Conserved introns reveal novel transcripts in Drosophila melanogaster

1 reference

https://api.crossref.org/works/10.1007%2FS11084-011-9262-1

21 January 2018

The oxygenation of the atmosphere and oceans

1 reference

https://api.crossref.org/works/10.1007%2FS11084-011-9262-1

21 January 2018

Canalization of development by microRNAs

1 reference

https://api.crossref.org/works/10.1007%2FS11084-011-9262-1

21 January 2018

Exploring phenotype space through neutral evolution.

1 reference

https://api.crossref.org/works/10.1007%2FS11084-011-9262-1

21 January 2018

Smoothness within ruggedness: the role of neutrality in adaptation.

1 reference

https://api.crossref.org/works/10.1007%2FS11084-011-9262-1

21 January 2018

The complex eukaryotic transcriptome: unexpected pervasive transcription and novel small RNAs

1 reference

https://api.crossref.org/works/10.1007%2FS11084-011-9262-1

21 January 2018

The antiquity of RNA-based evolution

1 reference

https://api.crossref.org/works/10.1007%2FS11084-011-9262-1

21 January 2018

Building a Multicellular Organism

1 reference

https://api.crossref.org/works/10.1007%2FS11084-011-9262-1

21 January 2018

The majority of total nuclear-encoded non-ribosomal RNA in a human cell is 'dark matter' un-annotated RNA

1 reference

https://api.crossref.org/works/10.1007%2FS11084-011-9262-1

21 January 2018

Mobile elements: drivers of genome evolution

1 reference

https://api.crossref.org/works/10.1007%2FS11084-011-9262-1

21 January 2018

Biogenesis of small RNAs in animals

1 reference

https://api.crossref.org/works/10.1007%2FS11084-011-9262-1

21 January 2018

The unicellular ancestry of animal development

1 reference

https://api.crossref.org/works/10.1007%2FS11084-011-9262-1

21 January 2018

The genome of the choanoflagellate Monosiga brevicollis and the origin of metazoans

1 reference

https://api.crossref.org/works/10.1007%2FS11084-011-9262-1

21 January 2018

Regulation of alternative splicing by snoRNAs

1 reference

https://api.crossref.org/works/10.1007%2FS11084-011-9262-1

21 January 2018

Fruiting body formation by Bacillus subtilis

1 reference

https://api.crossref.org/works/10.1007%2FS11084-011-9262-1

21 January 2018

Trends between gene content and genome size in prokaryotic species with larger genomes

1 reference

https://api.crossref.org/works/10.1007%2FS11084-011-9262-1

21 January 2018

A comprehensive evolutionary classification of proteins encoded in complete eukaryotic genomes

1 reference

https://api.crossref.org/works/10.1007%2FS11084-011-9262-1

21 January 2018

The evolution and functional diversification of animal microRNA genes

1 reference

https://api.crossref.org/works/10.1007%2FS11084-011-9262-1

21 January 2018

The energetics of genome complexity

1 reference

https://api.crossref.org/works/10.1007%2FS11084-011-9262-1

21 January 2018

Oxidative stress in marine environments: biochemistry and physiological ecology

1 reference

https://api.crossref.org/works/10.1007%2FS11084-011-9262-1

21 January 2018

MicroRNAs: key regulators of stem cells

1 reference

https://api.crossref.org/works/10.1007%2FS11084-011-9262-1

21 January 2018

Diverse pathways generate microRNA-like RNAs and Dicer-independent small interfering RNAs in fungi

1 reference

https://api.crossref.org/works/10.1007%2FS11084-011-9262-1

21 January 2018

Bacterial regulatory networks are extremely flexible in evolution

1 reference

https://api.crossref.org/works/10.1007%2FS11084-011-9262-1

21 January 2018

The role of DNA-binding specificity in the evolution of bacterial regulatory networks

1 reference

https://api.crossref.org/works/10.1007%2FS11084-011-9262-1

21 January 2018

Adaptive evolution of newly emerged micro-RNA genes in Drosophila

1 reference

https://api.crossref.org/works/10.1007%2FS11084-011-9262-1

21 January 2018

The origins of genome complexity

1 reference

https://api.crossref.org/works/10.1007%2FS11084-011-9262-1

21 January 2018

The repatterning of eukaryotic genomes by random genetic drift

1 reference

https://api.crossref.org/works/10.1007%2FS11084-011-9262-1

21 January 2018

Catalogues of mammalian long noncoding RNAs: modest conservation and incompleteness

1 reference

https://api.crossref.org/works/10.1007%2FS11084-011-9262-1

21 January 2018

Identifying global regulators in transcriptional regulatory networks in bacteria

1 reference

https://api.crossref.org/works/10.1007%2FS11084-011-9262-1

21 January 2018

The relationship between non-protein-coding DNA and eukaryotic complexity.

1 reference

https://api.crossref.org/works/10.1007%2FS11084-011-9262-1

21 January 2018

The Eukaryotic Genome as an RNA Machine

1 reference

https://api.crossref.org/works/10.1007%2FS11084-011-9262-1

21 January 2018

Long non-coding RNAs: insights into functions

1 reference

https://api.crossref.org/works/10.1007%2FS11084-011-9262-1

21 January 2018

Phylogeny of Opisthokonta and the evolution of multicellularity and complexity in Fungi and Metazoa

1 reference

https://api.crossref.org/works/10.1007%2FS11084-011-9262-1

21 January 2018

Plant and animal microRNAs: similarities and differences.

1 reference

https://api.crossref.org/works/10.1007%2FS11084-011-9262-1

21 January 2018

Customized strategies for discovering distant ncRNA homologs

1 reference

https://api.crossref.org/works/10.1007%2FS11084-011-9262-1

21 January 2018

Expansion of the eukaryotic proteome by alternative splicing

1 reference

https://api.crossref.org/works/10.1007%2FS11084-011-9262-1

21 January 2018

The nature and dynamics of bacterial genomes.

1 reference

https://api.crossref.org/works/10.1007%2FS11084-011-9262-1

21 January 2018

Slightly Deleterious Mutant Substitutions in Evolution

1 reference

https://api.crossref.org/works/10.1007%2FS11084-011-9262-1

21 January 2018

The Nearly Neutral Theory of Molecular Evolution

1 reference

https://api.crossref.org/works/10.1007%2FS11084-011-9262-1

21 January 2018

Genome-wide discovery and verification of novel structured RNAs in Plasmodium falciparum

1 reference

https://api.crossref.org/works/10.1007%2FS11084-011-9262-1

21 January 2018

Non-coding RNAs as regulators of embryogenesis

1 reference

https://api.crossref.org/works/10.1007%2FS11084-011-9262-1

21 January 2018

Allograft theory: transmission of devil facial-tumour disease

1 reference

https://api.crossref.org/works/10.1007%2FS11084-011-9262-1

21 January 2018

7SK snRNA: a noncoding RNA that plays a major role in regulating eukaryotic transcription

1 reference

https://api.crossref.org/works/10.1007%2FS11084-011-9262-1

21 January 2018

MicroRNAs and metazoan macroevolution: insights into canalization, complexity, and the Cambrian explosion

1 reference

https://api.crossref.org/works/10.1007%2FS11084-011-9262-1

21 January 2018

Functionality or transcriptional noise? Evidence for selection within long noncoding RNAs

1 reference

https://api.crossref.org/works/10.1007%2FS11084-011-9262-1

21 January 2018

Evolution and functions of long noncoding RNAs

1 reference

https://api.crossref.org/works/10.1007%2FS11084-011-9262-1

21 January 2018

Transcription: Enhancers make non-coding RNA.

1 reference

https://api.crossref.org/works/10.1007%2FS11084-011-9262-1

21 January 2018

Small regulatory non-coding RNAs in bacteria: physiology and mechanistic aspects

1 reference

https://api.crossref.org/works/10.1007%2FS11084-011-9262-1

21 January 2018

The origins of multicellularity and the early history of the genetic toolkit for animal development

1 reference

https://api.crossref.org/works/10.1007%2FS11084-011-9262-1

21 January 2018

Computational discovery of human coding and non-coding transcripts with conserved splice sites.

1 reference

https://api.crossref.org/works/10.1007%2FS11084-011-9262-1

21 January 2018

The let-7 family of microRNAs

1 reference

https://api.crossref.org/works/10.1007%2FS11084-011-9262-1

21 January 2018

From sequences to shapes and back: a case study in RNA secondary structures.

1 reference

https://api.crossref.org/works/10.1007%2FS11084-011-9262-1

21 January 2018

From snoRNA to miRNA: Dual function regulatory non-coding RNAs

1 reference

https://api.crossref.org/works/10.1007%2FS11084-011-9262-1

21 January 2018

The primary transcriptome of the major human pathogen Helicobacter pylori

1 reference

https://api.crossref.org/works/10.1007%2FS11084-011-9262-1

21 January 2018

Eukaryotic regulatory RNAs: an answer to the 'genome complexity' conundrum

1 reference

https://api.crossref.org/works/10.1007%2FS11084-011-9262-1

21 January 2018

Long noncoding RNAs: functional surprises from the RNA world

1 reference

https://api.crossref.org/works/10.1007%2FS11084-011-9262-1

21 January 2018

The Amphimedon queenslandica genome and the evolution of animal complexity

1 reference

https://api.crossref.org/works/10.1007%2FS11084-011-9262-1

21 January 2018

Regulatory RNAs in bacteria

1 reference

https://api.crossref.org/works/10.1007%2FS11084-011-9262-1

21 January 2018

Metabolite-binding RNA domains are present in the genes of eukaryotes

1 reference

https://api.crossref.org/works/10.1007%2FS11084-011-9262-1

21 January 2018

Pervasive transcription - Lessons from yeast

1 reference

https://api.crossref.org/works/10.1007%2FS11084-011-9262-1

21 January 2018

The evolutionary diversification of cyanobacteria: molecular-phylogenetic and paleontological perspectives

1 reference

https://api.crossref.org/works/10.1007%2FS11084-011-9262-1

21 January 2018

Most "dark matter" transcripts are associated with known genes

1 reference

https://api.crossref.org/works/10.1007%2FS11084-011-9262-1

21 January 2018

Response to “The Reality of Pervasive Transcription”

1 reference

https://api.crossref.org/works/10.1007%2FS11084-011-9262-1

21 January 2018

Loss of social behaviors by myxococcus xanthus during evolution in an unstructured habitat

1 reference

https://api.crossref.org/works/10.1007%2FS11084-011-9262-1

21 January 2018

Origin, biogenesis, and activity of plant microRNAs

1 reference

https://api.crossref.org/works/10.1007%2FS11084-011-9262-1

21 January 2018

The birth and death of microRNA genes in Drosophila.

1 reference

https://api.crossref.org/works/10.1007%2FS11084-011-9262-1

21 January 2018

Clonal origin and evolution of a transmissible cancer

1 reference

https://api.crossref.org/works/10.1007%2FS11084-011-9262-1

21 January 2018

Multicellularity: evolution and the egg.

1 reference

https://api.crossref.org/works/10.1007%2FS11084-011-9262-1

21 January 2018

A new role for expressed pseudogenes as ncRNA: regulation of mRNA stability of its homologous coding gene

1 reference

https://api.crossref.org/works/10.1007%2FS11084-011-9262-1

21 January 2018

Dysregulation of cardiogenesis, cardiac conduction, and cell cycle in mice lacking miRNA-1-2

1 reference

https://api.crossref.org/works/10.1007%2FS11084-011-9262-1

21 January 2018

Pseudogenes in the ENCODE regions: consensus annotation, analysis of transcription, and evolution

1 reference

https://api.crossref.org/works/10.1007%2FS11084-011-9262-1

21 January 2018

Size and complexity among multicellular organisms

1 reference

https://api.crossref.org/works/10.1007%2FS11084-011-9262-1

21 January 2018

Genome-wide transcription analyses in rice using tiling microarrays

1 reference

https://api.crossref.org/works/10.1007%2FS11084-011-9262-1

21 January 2018

Morphological complexity increase in metazoans

1 reference

https://api.crossref.org/works/10.1007%2FS11084-011-9262-1

21 January 2018

Transcription regulation and environmental adaptation in bacteria

1 reference

https://api.crossref.org/works/10.1007%2FS11084-011-9262-1

21 January 2018

MicroRNAs: components of an integrated system controlling cardiac development, physiology, and disease pathogenesis

1 reference

https://api.crossref.org/works/10.1007%2FS11084-011-9262-1

21 January 2018

The evolution of gene regulation by transcription factors and microRNAs

1 reference

https://pubmed.ncbi.nlm.nih.gov/22322874

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Continuity in evolution: on the nature of transitions

1 reference

https://pubmed.ncbi.nlm.nih.gov/22322874

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Long noncoding RNA: unveiling hidden layer of gene regulatory networks

1 reference

https://pubmed.ncbi.nlm.nih.gov/22322874

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Redox control and the evolution of multicellularity

1 reference

https://pubmed.ncbi.nlm.nih.gov/22322874

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The origins of eukaryotic gene structure

1 reference

https://pubmed.ncbi.nlm.nih.gov/22322874

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The origins of the RNA world

1 reference

https://pubmed.ncbi.nlm.nih.gov/22322874

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Energy constraints on the evolution of gene expression

1 reference

https://pubmed.ncbi.nlm.nih.gov/22322874

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1007/S11084-011-9262-1

1 reference

Europe PubMed Central

13 April 2018

http://europepmc.org/abstract/MED/22322874

1 reference

Europe PubMed Central

13 April 2018

http://europepmc.org/abstract/MED/22322874

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