(Q52334060)

1 July 2018

title

Impact of the tree prior on estimating clock rates during epidemic outbreaks. (English)

1 reference

1 July 2018

Louis du Plessis

2

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Tanja Stadler

object named as

Tanja Stadler

series ordinal

3

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author name string

Simon Möller

series ordinal

1

1 reference

1 July 2018

language of work or name

English

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publication date

2 April 2018

1 reference

1 July 2018

number of pages

6

1 reference

Proceedings of the National Academy of Sciences of the United States of America

inferred from page(s)

published in

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1 July 2018

volume

115

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1 July 2018

issue

16

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1 July 2018

page(s)

4200-4205

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1 July 2018

Creative Commons Attribution-NonCommercial-NoDerivs 4.0 International

copyright license

start time

2 April 2018

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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3 July 2018

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3 July 2018

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3 July 2018

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3 July 2018

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3 July 2018

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3 July 2018

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Fast Dating Using Least-Squares Criteria and Algorithms

3 July 2018

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Substitution Model Adequacy and Assessing the Reliability of Estimates of Virus Evolutionary Rates and Time Scales

3 July 2018

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Evaluating the Adequacy of Molecular Clock Models Using Posterior Predictive Simulations

3 July 2018

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Distinct lineages of Ebola virus in Guinea during the 2014 West African epidemic

3 July 2018

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Temporal and spatial analysis of the 2014-2015 Ebola virus outbreak in West Africa

3 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5910814

Molecular-clock methods for estimating evolutionary rates and timescales

3 July 2018

1 reference

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Genomic surveillance elucidates Ebola virus origin and transmission during the 2014 outbreak

3 July 2018

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Efficient Bayesian inference under the structured coalescent

3 July 2018

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3 July 2018

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RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

3 July 2018

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Uncovering epidemiological dynamics in heterogeneous host populations using phylogenetic methods

3 July 2018

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Birth-death skyline plot reveals temporal changes of epidemic spread in HIV and hepatitis C virus (HCV)

3 July 2018

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Improving the accuracy of demographic and molecular clock model comparison while accommodating phylogenetic uncertainty

3 July 2018

1 reference

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Time-dependent rates of molecular evolution

3 July 2018

1 reference

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3 July 2018

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Assessment of substitution model adequacy using frequentist and Bayesian methods

3 July 2018

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Branch length estimation and divergence dating: estimates of error in Bayesian and maximum likelihood frameworks

3 July 2018

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3 July 2018

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Model use in phylogenetics: nine key questions.

3 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5910814

Time dependency of molecular rate estimates and systematic overestimation of recent divergence times

3 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5910814

Bayesian coalescent inference of past population dynamics from molecular sequences

3 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5910814

Rates of evolution in ancient DNA from Adélie penguins.

3 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5910814

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3 July 2018

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Dating of the human-ape splitting by a molecular clock of mitochondrial DNA

3 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5910814

Lack of support for the time-dependent molecular evolution hypothesis

3 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5910814

Analyses of evolutionary dynamics in viruses are hindered by a time-dependent bias in rate estimates.

13 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5910814

Detection of implausible phylogenetic inferences using posterior predictive assessment of model fit.

13 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5910814

Elevated substitution rate estimates from ancient DNA: model violation and bias of Bayesian methods

13 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5910814

Can deleterious mutations explain the time dependency of molecular rate estimates?

13 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5910814

Identifiability of parameters in MCMC Bayesian inference of phylogeny

13 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/29610334

12 December 2020

inferred from PubMed ID database lookup

A tenth crucial question regarding model use in phylogenetics

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/29610334

12 December 2020

inferred from PubMed ID database lookup

Distribution of branch lengths and phylogenetic diversity under homogeneous speciation models

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/29610334

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1073/PNAS.1713314115

1 reference

1 July 2018

PMCID

5910814

1 reference

1 July 2018

PubMed ID

29610334

1 reference

1 July 2018