(Q38257608)

1 September 2017

1 reference

title

Molecular-clock methods for estimating evolutionary rates and timescales (English)

1 reference

1 September 2017

publication date

30 October 2014

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1 September 2017

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25290107%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

volume

23

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25290107%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

issue

24

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25290107%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

page(s)

5947-5965

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25290107%20AND%20SRC:MED&resulttype=core&format=json

Dating phylogenies with hybrid local molecular clocks

5 June 2020

cites work

1 reference

Effects of Models of Rate Evolution on Estimation of Divergence Dates with Special Reference to the Metazoan 18S Ribosomal RNA Phylogeny

21 January 2018

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Bayesian models of episodic evolution support a late precambrian explosive diversification of the Metazoa

21 January 2018

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Improving the accuracy of demographic and molecular clock model comparison while accommodating phylogenetic uncertainty

21 January 2018

1 reference

Accurate model selection of relaxed molecular clocks in bayesian phylogenetics

21 January 2018

1 reference

Performance of relaxed-clock methods in estimating evolutionary divergence times and their credibility intervals

21 January 2018

1 reference

Paleontological evidence to date the tree of life

21 January 2018

1 reference

Timing of morphological and ecological innovations in the cyanobacteria--a key to understanding the rise in atmospheric oxygen

21 January 2018

1 reference

Phylogenetic dating with confidence intervals using mean path lengths

21 January 2018

1 reference

Estimating divergence times in large phylogenetic trees

21 January 2018

1 reference

The genome as a life-history character: why rate of molecular evolution varies between mammal species

21 January 2018

1 reference

The modern molecular clock

21 January 2018

1 reference

Parasitic plants have increased rates of molecular evolution across all three genomes

21 January 2018

1 reference

Rate variation and estimation of divergence times using strict and relaxed clocks

21 January 2018

1 reference

Mitochondrial DNA sequences of primates: Tempo and mode of evolution

21 January 2018

1 reference

Synonymous nucleotide substitution rates in mammalian genes: implications for the molecular clock and the relationship of mammalian orders

21 January 2018

1 reference

Expansion dating: calibrating molecular clocks in marine species from expansions onto the Sunda Shelf Following the Last Glacial Maximum.

21 January 2018

1 reference

The structure of cytochromec and the rates of molecular evolution

21 January 2018

1 reference

The reconstructed evolutionary process with the fossil record

21 January 2018

1 reference

Determining divergence times of the major kingdoms of living organisms with a protein clock

21 January 2018

1 reference

Integrating fossil preservation biases in the selection of calibrations for molecular divergence time estimation

21 January 2018

1 reference

Bayesian random local clocks, or one rate to rule them all

21 January 2018

1 reference

Measurably evolving populations

21 January 2018

1 reference

Bayesian coalescent inference of past population dynamics from molecular sequences

21 January 2018

1 reference

Relaxed phylogenetics and dating with confidence

21 January 2018

1 reference

Bayesian phylogenetics with BEAUti and the BEAST 1.7

21 January 2018

1 reference

Using multiple relaxed-clock models to estimate evolutionary timescales from DNA sequence data

21 January 2018

1 reference

The impact of calibration and clock-model choice on molecular estimates of divergence times

21 January 2018

1 reference

ClockstaR: choosing the number of relaxed-clock models in molecular phylogenetic analysis

21 January 2018

1 reference

Evolutionary trees from DNA sequences: A maximum likelihood approach

21 January 2018

1 reference

Calibrating the Tree of Life: fossils, molecules and evolutionary timescales

21 January 2018

1 reference

Novel non-parametric models to estimate evolutionary rates and divergence times from heterochronous sequence data.

21 January 2018

1 reference

Sampling theory for neutral alleles in a varying environment.

21 January 2018

1 reference

Bayesian estimation of divergence times from large sequence alignments

21 January 2018

1 reference

From trajectories to averages: an improved description of the heterogeneity of substitution rates along lineages

21 January 2018

1 reference

Old taxa on young islands: a critique of the use of island age to date island-endemic clades and calibrate phylogenies

21 January 2018

1 reference

A hierarchical Bayesian model for calibrating estimates of species divergence times

21 January 2018

1 reference

A dirichlet process prior for estimating lineage-specific substitution rates

21 January 2018

1 reference

The fossilized birth-death process for coherent calibration of divergence-time estimates

21 January 2018

1 reference

Calibrated tree priors for relaxed phylogenetics and divergence time estimation

21 January 2018

1 reference

TreeTime: an extensible C++ software package for Bayesian phylogeny reconstruction with time-calibration

21 January 2018

1 reference

Beyond fossil calibrations: realities of molecular clock practices in evolutionary biology

21 January 2018

1 reference

An examination of phylogenetic models of substitution rate variation among lineages

21 January 2018

1 reference

The changing face of the molecular evolutionary clock

21 January 2018

1 reference

Improved characterisation of among-lineage rate variation in cetacean mitogenomes using codon-partitioned relaxed clocks

21 January 2018

1 reference

Accounting for calibration uncertainty in phylogenetic estimation of evolutionary divergence times

21 January 2018

1 reference

Skyline-plot methods for estimating demographic history from nucleotide sequences

21 January 2018

1 reference

Accuracy of rate estimation using relaxed-clock models with a critical focus on the early metazoan radiation

21 January 2018

1 reference

Time-dependent rates of molecular evolution

21 January 2018

1 reference

Bayesian inference of phylogeny and its impact on evolutionary biology

21 January 2018

1 reference

Bayesian phylogenetic model selection using reversible jump Markov chain Monte Carlo.

21 January 2018

1 reference

The impact of the representation of fossil calibrations on Bayesian estimation of species divergence times

21 January 2018

1 reference

Heterogeneous genomic molecular clocks in primates

21 January 2018

1 reference

On Some Principles Governing Molecular Evolution

21 January 2018

1 reference

Performance of a divergence time estimation method under a probabilistic model of rate evolution

21 January 2018

1 reference

Molecular clocks: four decades of evolution

21 January 2018

1 reference

The local-clock permutation test: a simple test to compare rates of molecular evolution on phylogenetic trees.

21 January 2018

1 reference

PartitionFinder: Combined Selection of Partitioning Schemes and Substitution Models for Phylogenetic Analyses

21 January 2018

1 reference

An examination of the constancy of the rate of molecular evolution

21 January 2018

1 reference

Computing Bayes factors using thermodynamic integration.

21 January 2018

1 reference

PhyloBayes 3: a Bayesian software package for phylogenetic reconstruction and molecular dating

21 January 2018

1 reference

Continuous and tractable models for the variation of evolutionary rates.

21 January 2018

1 reference

A general comparison of relaxed molecular clock models

21 January 2018

1 reference

Model averaging and Bayes factor calculation of relaxed molecular clocks in Bayesian phylogenetics

21 January 2018

1 reference

Evaluation of Bayesian models of substitution rate evolution--parental guidance versus mutual independence

21 January 2018

1 reference

Evaluating fossil calibrations for dating phylogenies in light of rates of molecular evolution: a comparison of three approaches

21 January 2018

1 reference

PRIMARY STRUCTURE AND EVOLUTION OF CYTOCHROME C

21 January 2018

1 reference

A simple method for bracketing absolute divergence times on molecular phylogenies using multiple fossil calibration points

21 January 2018

1 reference

A multilocus timescale for oomycete evolution estimated under three distinct molecular clock models

21 January 2018

1 reference

Smooth skyride through a rough skyline: Bayesian coalescent-based inference of population dynamics

21 January 2018

1 reference

Phylogenetic estimation of timescales using ancient DNA: the effects of temporal sampling scheme and uncertainty in sample ages.

21 January 2018

1 reference

Extensive variation in synonymous substitution rates in mitochondrial genes of seed plants.

21 January 2018

1 reference

Extinction rates can be estimated from molecular phylogenies.

21 January 2018

1 reference

Accelerated mutation accumulation in asexual lineages of a freshwater snail

21 January 2018

1 reference

A simple method for estimating informative node age priors for the fossil calibration of molecular divergence time analyses

21 January 2018

1 reference

Molecular dating of phylogenies by likelihood methods: a comparison of models and a new information criterion

21 January 2018

1 reference

Best practices for justifying fossil calibrations

21 January 2018

1 reference

Quantitative prediction of molecular clock and ka/ks at short timescales

21 January 2018

1 reference

Divergence time estimation using fossils as terminal taxa and the origins of Lissamphibia.

21 January 2018

1 reference

Estimating the rate of molecular evolution: incorporating non-contemporaneous sequences into maximum likelihood phylogenies

21 January 2018

1 reference

Probability distribution of molecular evolutionary trees: a new method of phylogenetic inference

21 January 2018

1 reference

Inferring speciation times under an episodic molecular clock

21 January 2018

1 reference

Approximate likelihood calculation on a phylogeny for Bayesian estimation of divergence times

21 January 2018

1 reference

Phylogenomic datasets provide both precision and accuracy in estimating the timescale of placental mammal phylogeny

21 January 2018

1 reference

The impact of the rate prior on Bayesian estimation of divergence times with multiple Loci

21 January 2018

1 reference

A total-evidence approach to dating with fossils, applied to the early radiation of the hymenoptera

21 January 2018

1 reference

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

21 January 2018

1 reference

Assessing calibration uncertainty in molecular dating: the assignment of fossils to alternative calibration points

21 January 2018

1 reference

A Nonparametric Approach to Estimating Divergence Times in the Absence of Rate Constancy

21 January 2018

1 reference

Estimating absolute rates of molecular evolution and divergence times: a penalized likelihood approach

21 January 2018

1 reference

r8s: inferring absolute rates of molecular evolution and divergence times in the absence of a molecular clock

21 January 2018

1 reference

Testing the impact of calibration on molecular divergence times using a fossil-rich group: the case of Nothofagus (Fagales).

21 January 2018

1 reference

A Bayesian phylogenetic method to estimate unknown sequence ages

21 January 2018

1 reference

treePL: divergence time estimation using penalized likelihood for large phylogenies

21 January 2018

1 reference

Universal pacemaker of genome evolution

21 January 2018

1 reference

Sampling-through-time in birth-death trees

21 January 2018

1 reference

Dating phylogenies with sequentially sampled tips

21 January 2018

1 reference

RAxML-Light: a tool for computing terabyte phylogenies

21 January 2018

1 reference

Should phylogenetic models be trying to "fit an elephant"?

21 January 2018

1 reference

Bayesian selection of continuous-time Markov chain evolutionary models

21 January 2018

1 reference

Model Selection in Phylogenetics

21 January 2018

1 reference

Microsatellites are molecular clocks that support accurate inferences about history

21 January 2018

1 reference

Estimating divergence times in large molecular phylogenies

21 January 2018

1 reference

A generation time effect on the rate of molecular evolution in invertebrates.

21 January 2018

1 reference

Divergence time and evolutionary rate estimation with multilocus data

21 January 2018

1 reference

Estimating the rate of evolution of the rate of molecular evolution

21 January 2018

1 reference

Are pollen fossils useful for calibrating relaxed molecular clock dating of phylogenies? A comparative study using Myrtaceae

21 January 2018

1 reference

A universal molecular clock of protein folds and its power in tracing the early history of aerobic metabolism and planet oxygenation

21 January 2018

1 reference

Exploring uncertainty in the calibration of the molecular clock

21 January 2018

1 reference

Molecular dating when rates vary

21 January 2018

1 reference

Molecular dates for the "cambrian explosion": the influence of prior assumptions.

21 January 2018

1 reference

Dating primate divergences through an integrated analysis of palaeontological and molecular data

21 January 2018

1 reference

Stability along with extreme variability in core genome evolution

21 January 2018

1 reference

Rates of nucleotide substitution vary greatly among plant mitochondrial, chloroplast, and nuclear DNAs

21 January 2018

1 reference

A synchronized global sweep of the internal genes of modern avian influenza virus.

21 January 2018

1 reference

Evidence for higher rates of nucleotide substitution in rodents than in man

21 January 2018

1 reference

A distance-based least-square method for dating speciation events

21 January 2018

1 reference

Improving marginal likelihood estimation for Bayesian phylogenetic model selection

21 January 2018

1 reference

Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: approximate methods

21 January 2018

1 reference

Maximum-Likelihood Models for Combined Analyses of Multiple Sequence Data

21 January 2018

1 reference

PAML 4: phylogenetic analysis by maximum likelihood

21 January 2018

1 reference

Bayesian phylogenetic inference using DNA sequences: a Markov Chain Monte Carlo Method

21 January 2018

1 reference

Bayesian estimation of species divergence times under a molecular clock using multiple fossil calibrations with soft bounds

21 January 2018

1 reference

Estimation of primate speciation dates using local molecular clocks

21 January 2018

1 reference

A Mathematical Theory of Evolution, Based on the Conclusions of Dr. J. C. Willis, F.R.S

21 January 2018

1 reference

Evolutionary processes and evolutionary noise at the molecular level. I. Functional density in proteins

21 January 2018

1 reference

Evolutionary Divergence and Convergence in Proteins

21 January 2018

1 reference

Application of molecular clocks in ornithology revisited

21 January 2018

1 reference