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Mapping the Evolutionary Potential of RNA Viruses.
scientific article published in April 2018
Mapping the Evolutionary Potential of RNA Viruses
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scholarly article
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Europe PubMed Central
PMC publication ID
5908228
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29649440%20AND%20SRC:MED&resulttype=core&format=json
retrieved
23 March 2020
title
Mapping the Evolutionary Potential of RNA Viruses
(English)
1 reference
stated in
Europe PubMed Central
PMC publication ID
5908228
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29649440%20AND%20SRC:MED&resulttype=core&format=json
retrieved
23 March 2020
main subject
Evolutionary dynamics
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experimental evolution
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microfluidics
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parasitology
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author
Patrick T Dolan
series ordinal
1
1 reference
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Europe PubMed Central
PMC publication ID
5908228
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29649440%20AND%20SRC:MED&resulttype=core&format=json
retrieved
23 March 2020
Raul Andino
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3
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Raul Andino
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Europe PubMed Central
PMC publication ID
5908228
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23 March 2020
author name string
Zachary J Whitfield
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2
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Europe PubMed Central
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5908228
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29649440%20AND%20SRC:MED&resulttype=core&format=json
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23 March 2020
language of work or name
English
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publication date
1 April 2018
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Europe PubMed Central
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5908228
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retrieved
23 March 2020
published in
Cell Host & Microbe
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Europe PubMed Central
PMC publication ID
5908228
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29649440%20AND%20SRC:MED&resulttype=core&format=json
retrieved
23 March 2020
volume
23
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Europe PubMed Central
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5908228
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29649440%20AND%20SRC:MED&resulttype=core&format=json
retrieved
23 March 2020
issue
4
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Europe PubMed Central
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5908228
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retrieved
23 March 2020
page(s)
435-446
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Europe PubMed Central
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5908228
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29649440%20AND%20SRC:MED&resulttype=core&format=json
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23 March 2020
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5908228
retrieved
25 August 2018
An experimentally determined evolutionary model dramatically improves phylogenetic fit.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5908228
retrieved
25 August 2018
High-throughput profiling of influenza A virus hemagglutinin gene at single-nucleotide resolution
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5908228
retrieved
25 August 2018
A predictive fitness model for influenza
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5908228
retrieved
25 August 2018
Should evolutionary geneticists worry about higher-order epistasis?
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5908228
retrieved
25 August 2018
Mutational and fitness landscapes of an RNA virus revealed through population sequencing
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5908228
retrieved
25 August 2018
Single-cell mass cytometry for analysis of immune system functional states
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5908228
retrieved
25 August 2018
Stability-mediated epistasis constrains the evolution of an influenza protein
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5908228
retrieved
25 August 2018
Analyses of the effects of all ubiquitin point mutants on yeast growth rate
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5908228
retrieved
25 August 2018
What can we predict about viral evolution and emergence?
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5908228
retrieved
25 August 2018
Predictability of evolution depends nonmonotonically on population size
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5908228
retrieved
25 August 2018
Codon usage determines the mutational robustness, evolutionary capacity, and virulence of an RNA virus
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5908228
retrieved
25 August 2018
Systematic identification of H274Y compensatory mutations in influenza A virus neuraminidase by high-throughput screening
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5908228
retrieved
25 August 2018
A fundamental protein property, thermodynamic stability, revealed solely from large-scale measurements of protein function
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5908228
retrieved
25 August 2018
Virus population bottlenecks during within-host progression and host-to-host transmission.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5908228
retrieved
25 August 2018
Identifying hosts of families of viruses: a machine learning approach
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5908228
retrieved
25 August 2018
Accurate sampling and deep sequencing of the HIV-1 protease gene using a Primer ID
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5908228
retrieved
25 August 2018
Visualizing fitness landscapes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5908228
retrieved
25 August 2018
A biophysical protein folding model accounts for most mutational fitness effects in viruses
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5908228
retrieved
25 August 2018
Deep mutational scanning: assessing protein function on a massive scale
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5908228
retrieved
25 August 2018
Experimental illumination of a fitness landscape
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5908228
retrieved
25 August 2018
High-resolution mapping of protein sequence-function relationships
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5908228
retrieved
25 August 2018
Quasispecies theory and the behavior of RNA viruses
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5908228
retrieved
25 August 2018
Global migration dynamics underlie evolution and persistence of human influenza A (H3N2)
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5908228
retrieved
25 August 2018
Epidemic dynamics revealed in dengue evolution.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5908228
retrieved
25 August 2018
From fitness landscapes to seascapes: non-equilibrium dynamics of selection and adaptation.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5908228
retrieved
25 August 2018
Shifts in the selection-drift balance drive the evolution and epidemiology of foot-and-mouth disease virus
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5908228
retrieved
25 August 2018
An investigation of the statistical power of neutrality tests based on comparative and population genetic data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5908228
retrieved
25 August 2018
Engineering attenuated virus vaccines by controlling replication fidelity
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5908228
retrieved
25 August 2018
A single mutation in chikungunya virus affects vector specificity and epidemic potential
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5908228
retrieved
25 August 2018
Stochastic processes are key determinants of short-term evolution in influenza a virus
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5908228
retrieved
25 August 2018
Thermodynamics of neutral protein evolution
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5908228
retrieved
25 August 2018
Selection for mutational robustness in finite populations
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5908228
retrieved
25 August 2018
Darwinian evolution can follow only very few mutational paths to fitter proteins
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5908228
retrieved
25 August 2018
Quasispecies diversity determines pathogenesis through cooperative interactions in a viral population
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5908228
retrieved
25 August 2018
Evolution of mutational robustness in an RNA virus
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5908228
retrieved
25 August 2018
VACCINE-DERIVED POLIOVIRUSES AND THE ENDGAME STRATEGY FOR GLOBAL POLIO ERADICATION *
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5908228
retrieved
25 August 2018
Quasispecies theory in the context of population genetics
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5908228
retrieved
25 August 2018
Is the quasispecies concept relevant to RNA viruses?
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5908228
retrieved
25 August 2018
Natural genetic exchanges between vaccine and wild poliovirus strains in humans.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5908228
retrieved
25 August 2018
Duration of poliovirus excretion and its implications for acute flaccid paralysis surveillance: a review of the literature
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5908228
retrieved
25 August 2018
On the nature of virus quasispecies
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5908228
retrieved
25 August 2018
Determinants of attenuation and temperature sensitivity in the type 1 poliovirus Sabin vaccine
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5908228
retrieved
25 August 2018
Selforganization of matter and the evolution of biological macromolecules
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5908228
retrieved
25 August 2018
Identifiers
DOI
10.1016/J.CHOM.2018.03.012
1 reference
stated in
Europe PubMed Central
PMC publication ID
5908228
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29649440%20AND%20SRC:MED&resulttype=core&format=json
retrieved
23 March 2020
PMC publication ID
5908228
1 reference
stated in
Europe PubMed Central
PMC publication ID
5908228
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29649440%20AND%20SRC:MED&resulttype=core&format=json
retrieved
23 March 2020
PubMed publication ID
29649440
1 reference
stated in
Europe PubMed Central
PMC publication ID
5908228
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29649440%20AND%20SRC:MED&resulttype=core&format=json
retrieved
23 March 2020
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