(Q52613229)

4 May 2018

title

BART: a transcription factor prediction tool with query gene sets or epigenomic profiles. (English)

1 reference

4 May 2018

Chongzhi Zang

6

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Mete Civelek

series ordinal

2

object named as

Mete Civelek

1 reference

4 May 2018

4

Nathan C Sheffield

1 reference

4 May 2018

Zhenjia Wang

1

1 reference

4 May 2018

Clint L Miller

series ordinal

3

1 reference

4 May 2018

Michael J Guertin

series ordinal

5

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4 May 2018

language of work or name

English

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publication date

28 March 2018

1 reference

4 May 2018

published in

Bioinformatics

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4 May 2018

The Human Transcription Factors.

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6084568

Widespread transcriptional pausing and elongation control at enhancers.

2 November 2018

1 reference

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Epigenomic annotation-based interpretation of genomic data: from enrichment analysis to machine learning.

2 November 2018

1 reference

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Transcriptional Addiction in Cancer.

2 November 2018

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Cistrome Data Browser: a data portal for ChIP-Seq and chromatin accessibility data in human and mouse

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6084568

Modeling cis-regulation with a compendium of genome-wide histone H3K27ac profiles.

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6084568

Analysis of Genomic Sequence Motifs for Deciphering Transcription Factor Binding and Transcriptional Regulation in Eukaryotic Cells

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6084568

iRegulon: from a gene list to a gene regulatory network using large motif and track collections

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6084568

Transcriptional enhancers: from properties to genome-wide predictions

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6084568

Relating genes to function: identifying enriched transcription factors using the ENCODE ChIP-Seq significance tool

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6084568

Patterns of regulatory activity across diverse human cell types predict tissue identity, transcription factor binding, and long-range interactions

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6084568

DNA-binding specificities of human transcription factors

2 November 2018

1 reference

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Molecular signatures database (MSigDB) 3.0.

2 November 2018

1 reference

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A unique chromatin signature uncovers early developmental enhancers in humans

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6084568

Histone H3K27ac separates active from poised enhancers and predicts developmental state

2 November 2018

1 reference

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Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities

2 November 2018

1 reference

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GREAT improves functional interpretation of cis-regulatory regions

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6084568

Pscan: finding over-represented transcription factor binding site motifs in sequences from co-regulated or co-expressed genes

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6084568

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6084568

Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6084568

10.1093/BIOINFORMATICS/BTY194

2 November 2018

Identifiers

DOI

1 reference

4 May 2018

journals/bioinformatics/WangCMSGZ18

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

PMC publication ID

6084568

0 references

1 reference

4 May 2018