(Q52705748)

6 May 2018

title

Nonstationary evolution and compositional heterogeneity in beetle mitochondrial phylogenomics. (English)

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6 May 2018

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3

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6 May 2018

Nathan C. Sheffield

series ordinal

1

object named as

Nathan C Sheffield

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6 May 2018

2

Hojun Song

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6 May 2018

author name string

Michael F Whiting

series ordinal

4

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6 May 2018

publication date

15 July 2009

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6 May 2018

published in

Systematic Biology

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6 May 2018

volume

58

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6 May 2018

issue

4

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6 May 2018

page(s)

381-394

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6 May 2018

Mitochondrial genome sequence of the Brazilian luminescent click beetle Pyrophorus divergens (Coleoptera: Elateridae): mitochondrial genes utility to investigate the evolutionary history of Coleoptera and its bioluminescence

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The mitochondrial genome of the mosquito Anopheles gambiae: DNA sequence, genome organization, and comparisons with mitochondrial sequences of other insects

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A review of long-branch attraction

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On the head morphology of Tetraphalerus, the phylogeny of Archostemata and the basal branching events in Coleoptera

21 January 2018

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Phylogenetic Relationships of the Suborders of Coleoptera (Insecta)

21 January 2018

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Accounting for gene rate heterogeneity in phylogenetic inference

21 January 2018

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A Bayesian compound stochastic process for modeling nonstationary and nonhomogeneous sequence evolution

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21 January 2018

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Mitochondrial DNA sequences of primates: Tempo and mode of evolution

21 January 2018

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Mitochondrial genomics and the new insect order Mantophasmatodea

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Mitochondrial genome data alone are not enough to unambiguously resolve the relationships of Entognatha, Insecta and Crustacea sensu lato (Arthropoda)

21 January 2018

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Molecular evolution of the wingless gene and its implications for the phylogenetic placement of the butterfly family Riodinidae (Lepidoptera: papilionoidea).

21 January 2018

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Bias in phylogenetic reconstruction of vertebrate rhodopsin sequences.

21 January 2018

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The mitochondrial DNA molecular of Drosophila yakuba: nucleotide sequence, gene organization, and genetic code

21 January 2018

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Choosing the best genes for the job: the case for stationary genes in genome-scale phylogenetics.

21 January 2018

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Effects of nucleotide composition bias on the success of the parsimony criterion in phylogenetic inference

21 January 2018

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The archaebacterial origin of eukaryotes

21 January 2018

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Comment on "Hexapod origins: monophyletic or paraphyletic?".

21 January 2018

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MUSCLE: multiple sequence alignment with high accuracy and high throughput

21 January 2018

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Reliability of Bayesian Posterior Probabilities and Bootstrap Frequencies in Phylogenetics

21 January 2018

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Problems with Parsimony in Sequences of Biased Base Composition

21 January 2018

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A preliminary mitochondrial genome phylogeny of Orthoptera (Insecta) and approaches to maximizing phylogenetic signal found within mitochondrial genome data

21 January 2018

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Modeling compositional heterogeneity

21 January 2018

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Compositional bias may affect both DNA-based and protein-based phylogenetic reconstructions.

21 January 2018

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Sequence and phylogenetic analysis of the complete mitochondrial genome of the flour beetle Tribolium castanaeum

21 January 2018

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Inferring phylogenies from DNA sequences of unequal base compositions

21 January 2018

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https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP037

Inferring pattern and process: maximum-likelihood implementation of a nonhomogeneous model of DNA sequence evolution for phylogenetic analysis.

21 January 2018

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A comprehensive analysis of mammalian mitochondrial genome base composition and improved phylogenetic methods

21 January 2018

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A reversible jump method for Bayesian phylogenetic inference with a nonhomogeneous substitution model.

21 January 2018

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Base-compositional heterogeneity in the RAG1 locus among didelphid marsupials: implications for phylogenetic inference and the evolution of GC content

21 January 2018

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Tracing the decay of the historical signal in biological sequence data

21 January 2018

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Trichomonas hydrogenosomes contain the NADH dehydrogenase module of mitochondrial complex I.

21 January 2018

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Dense taxonomic EST sampling and its applications for molecular systematics of the Coleoptera (beetles).

21 January 2018

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A comprehensive phylogeny of beetles reveals the evolutionary origins of a superradiation

21 January 2018

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Performance of maximum parsimony and likelihood phylogenetics when evolution is heterogeneous

21 January 2018

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https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP037

Reconstructing evolutionary trees from DNA and protein sequences: paralinear distances

21 January 2018

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https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP037

Rhinorhipidae, a new beetle family from Australia, with comments on the phylogeny of the elateriformia

21 January 2018

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https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP037

Evolution and Classification of Beetles

21 January 2018

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Mitochondrial genomes of two luminous beetles, Rhagophthalmus lufengensis and R. ohbai (Arthropoda, Insecta, Coleoptera).

21 January 2018

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https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP037

Molecular phylogeny of Dictyostelium discoideum by protein sequence comparison

21 January 2018

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The complete mitochondrial DNA sequence of the basal hexapod Tetrodontophora bielanensis: evidence for heteroplasmy and tRNA translocations

21 January 2018

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https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP037

Molecular phylogenetic analysis among bryophytes and tracheophytes based on combined data of plastid coded genes and the 18S rRNA gene

21 January 2018

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https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP037

AWTY (are we there yet?): a system for graphical exploration of MCMC convergence in Bayesian phylogenetics

21 January 2018

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https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP037

Heterotachy and long-branch attraction in phylogenetics

21 January 2018

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https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP037

Genome-scale phylogeny and the detection of systematic biases

21 January 2018

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https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP037

The root of the mammalian tree inferred from whole mitochondrial genomes

21 January 2018

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https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP037

Molecular evolution and phylogeny of the Drosophila saltans species group inferred from the Xdh gene.

21 January 2018

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https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP037

MrBayes 3: Bayesian phylogenetic inference under mixed models

21 January 2018

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https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP037

Artifactual phylogenies caused by correlated distribution of substitution rates among sites and lineages: the good, the bad, and the ugly.

21 January 2018

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https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP037

A comparative analysis of mitochondrial genomes in Coleoptera (Arthropoda: Insecta) and genome descriptions of six new beetles

21 January 2018

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https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP037

Should phylogenetic models be trying to "fit an elephant"?

21 January 2018

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https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP037

Phylogenetic and genomic analysis of the complete mitochondrial DNA sequence of the spotted asparagus beetle Crioceris duodecimpunctata

21 January 2018

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https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP037

MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) Software Version 4.0

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP037

Tree rooting with outgroups when they differ in their nucleotide composition from the ingroup: the Drosophila saltans and willistoni groups, a case study

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP037

Shared nucleotide composition biases among species and their impact on phylogenetic reconstructions of the Drosophilidae

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP037

Base compositional bias and phylogenetic analyses: a test of the "flying DNA" hypothesis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP037

Towards resolving the interordinal relationships of placental mammals

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP037

Among-site rate variation and its impact on phylogenetic analyses

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP037

Molecular phylogenetics of Elateriformia (Coleoptera): evolution of bioluminescence and neoteny

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP037

The Biasing Effect of Compositional Heterogeneity on Phylogenetic Estimates May be Underestimated

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP037

Detecting and Overcoming Systematic Errors in Genome-Scale Phylogenies

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP037

21 January 2018

Identifiers

DOI

10.1093/SYSBIO/SYP037

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6 May 2018

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6 May 2018