(Q53657663)

16 May 2018

title

Non-interacting surface solvation and dynamics in protein-protein interactions. (English)

1 reference

16 May 2018

protein-protein interaction

main subject

1 reference

based on heuristic

inferred from title

author

Panagiotis L. Kastritis

series ordinal

2

1 reference

16 May 2018

Alexandre Bonvin

series ordinal

3

1 reference

16 May 2018

Koen M Visscher

series ordinal

1

object named as

Koen M Visscher

1 reference

16 May 2018

language of work or name

English

0 references

publication date

21 January 2015

1 reference

16 May 2018

published in

Proteins

1 reference

16 May 2018

volume

83

1 reference

16 May 2018

issue

3

1 reference

16 May 2018

page(s)

445-458

1 reference

16 May 2018

Advances in automated NMR protein structure determination

cites work

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24741

Protein structure determination in living cells by in-cell NMR spectroscopy

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24741

High-throughput crystallography for structural genomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24741

The Protein Data Bank: a historical perspective.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24741

21 January 2018

The Protein Data Bank

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24741

Anatomy of hot spots in protein interfaces

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24741

Molecular origins of binding affinity: seeking the Archimedean point

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24741

Protein-protein interaction and quaternary structure

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24741

Principles of protein-protein recognition

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24741

Calculation of the free energy of association for protein complexes

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24741

Are scoring functions in protein-protein docking ready to predict interactomes? Clues from a novel binding affinity benchmark

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24741

A structure-based benchmark for protein-protein binding affinity

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24741

On the binding affinity of macromolecular interactions: daring to ask why proteins interact

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24741

Community-wide assessment of protein-interface modeling suggests improvements to design methodology

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24741

Proteins feel more than they see: fine-tuning of binding affinity by properties of the non-interacting surface.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24741

Mapping hydration dynamics around a protein surface

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24741

Water-protein interactions from high-resolution protein crystallography

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24741

Hydration water and bulk water in proteins have distinct properties in radial distributions calculated from 105 atomic resolution crystal structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24741

Water structure and interactions with protein surfaces

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24741

Probing hydration and the stability of protein solutions--a colloid science approach

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24741

Low-frequency vibrational spectrum of water in the hydration layer of a protein: a molecular dynamics simulation study.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24741

Hydration and DNA recognition by homeodomains

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24741

Hydration of proteins. A comparison of experimental residence times of water molecules solvating the bovine pancreatic trypsin inhibitor with theoretical model calculations

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24741

Kinetics of DNA hydration

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24741

NMR observation of individual molecules of hydration water bound to DNA duplexes: direct evidence for a spine of hydration water present in aqueous solution

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24741

Water molecules in DNA recognition I: hydration lifetimes of trp operator DNA in solution measured by NMR spectroscopy.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24741

Water molecules in DNA recognition II: a molecular dynamics view of the structure and hydration of the trp operator

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24741

Water mediation in protein folding and molecular recognition

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24741

The role of water in protein-DNA recognition

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24741

Explicit treatment of water molecules in data-driven protein-protein docking: the solvated HADDOCKing approach.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24741

Role of water mediated interactions in protein-protein recognition landscapes

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24741

Structural and dynamic roles of permanent water molecules in ligand molecular recognition by chicken liver bile acid binding protein

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24741

Solvated protein-DNA docking using HADDOCK.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24741

Solvated protein-protein docking using Kyte-Doolittle-based water preferences

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24741

Kunitz-type soybean trypsin inhibitor revisited: refined structure of its complex with porcine trypsin reveals an insight into the interaction between a homologous inhibitor from Erythrina caffra and tissue-type plasminogen activator

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24741

The crystal structure of the DNase domain of colicin E7 in complex with its inhibitor Im7 protein

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24741

Protein-protein recognition: crystal structural analysis of a barnase-barstar complex at 2.0-A resolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24741

Structural basis for ubiquitin-mediated dimerization and activation of the ubiquitin protein ligase Cbl-b

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24741

Structural analysis of the mechanism of adenovirus binding to its human cellular receptor, CAR

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24741

GROMACS 4.5: a high-throughput and highly parallel open source molecular simulation toolkit

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24741

GROMACS 4: Algorithms for Highly Efficient, Load-Balanced, and Scalable Molecular Simulation

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24741

Comparison of simple potential functions for simulating liquid water

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24741

Canonical sampling through velocity rescaling

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24741

Particle mesh Ewald: An N⋅log(N) method for Ewald sums in large systems

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24741

A simple method for displaying the hydropathic character of a protein

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24741

Enthalpy-entropy compensation: a phantom or something useful?

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24741

Enthalpy-entropy compensation: a phantom phenomenon

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24741

Enthalpy-entropy compensation reveals solvent reorganization as a driving force for supramolecular encapsulation in water

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24741

Entropy-enthalpy compensation: fact or artifact?

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24741

Cooperativity, partially bound states, and enthalpy-entropy compensation

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24741

Uses of enthalpy–entropy compensation in protein research

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24741

Water in protein structure prediction

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24741

Molecular dynamics with coupling to an external bath

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24741

Structure and Dynamics of the TIP3P, SPC, and SPC/E Water Models at 298 K

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24741

21 January 2018

Identifiers

DOI

10.1002/PROT.24741

1 reference

16 May 2018

1 reference

16 May 2018