(Q54216105)

8 July 2018

title

Generation and comparative genomics of synthetic dengue viruses. (English)

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8 July 2018

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Tamir Tuller

8

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Justin G Julander

7

object named as

Justin Julander

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8 July 2018

Eli Goz

1

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8 July 2018

Yael Tsalenchuck

2

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8 July 2018

Rony Oren Benaroya

3

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8 July 2018

Zohar Zafrir

4

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8 July 2018

Shimshi Atar

5

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8 July 2018

Tahel Altman

6

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8 July 2018

language of work or name

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8 May 2018

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8 July 2018

published in

BMC Bioinformatics

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8 July 2018

volume

19

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8 July 2018

page(s)

140

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8 July 2018

issue

Suppl 6

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8 July 2018

Creative Commons Attribution 4.0 International

copyright license

start time

1 May 2018

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

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on focus list of Wikimedia project

WikiProject Zika Corpus

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exact match

https://scigraph.springernature.com/pub.10.1186/s12859-018-2132-3

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cites work

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Illustrating and homology modeling the proteins of the Zika virus

10 July 2018

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A robust method for the rapid generation of recombinant Zika virus expressing the GFP reporter gene

10 July 2018

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Evidence of a Direct Evolutionary Selection for Strong Folding and Mutational Robustness Within HIV Coding Regions

10 July 2018

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10 July 2018

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10 July 2018

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10 July 2018

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Widespread signatures of local mRNA folding structure selection in four Dengue virus serotypes

10 July 2018

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"ISA-Lation" of Single-Stranded Positive-Sense RNA Viruses from Non-Infectious Clinical/Animal Samples

10 July 2018

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Oncolytic viruses: a new class of immunotherapy drugs

10 July 2018

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First report of autochthonous transmission of Zika virus in Brazil

10 July 2018

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RNA virus attenuation by codon pair deoptimisation is an artefact of increases in CpG/UpA dinucleotide frequencies.

10 July 2018

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The effect of tRNA levels on decoding times of mRNA codons

10 July 2018

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Single-stranded positive-sense RNA viruses generated in days using infectious subgenomic amplicons

10 July 2018

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Construction and characterisation of a complete reverse genetics system of dengue virus type 3.

10 July 2018

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CpG usage in RNA viruses: data and hypotheses

10 July 2018

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A simplified positive-sense-RNA virus construction approach that enhances analysis throughput

10 July 2018

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Changes in codon-pair bias of human immunodeficiency virus type 1 have profound effects on virus replication in cell culture

10 July 2018

1 reference

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The role of mutational robustness in RNA virus evolution

10 July 2018

1 reference

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Going viral: next-generation sequencing applied to phage populations in the human gut.

10 July 2018

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Viral quasispecies evolution

10 July 2018

1 reference

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Slow fitness recovery in a codon-modified viral genome

10 July 2018

1 reference

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10 July 2018

ViennaRNA Package 2.0

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5998877

Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5998877

Successful propagation of flavivirus infectious cDNAs by a novel method to reduce the cryptic bacterial promoter activity of virus genomes

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5998877

Dengue: a continuing global threat

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5998877

Virus hybrids as nanomaterials for biotechnology

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5998877

Quasispecies theory and the behavior of RNA viruses

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5998877

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

10 July 2018

1 reference

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Live attenuated influenza virus vaccines by computer-aided rational design

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5998877

Cowpea mosaic virus: the plant virus-based biotechnology workhorse

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5998877

Fine-tuning translation kinetics selection as the driving force of codon usage bias in the hepatitis A virus capsid

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5998877

Fast and accurate short read alignment with Burrows-Wheeler transform

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5998877

Analysis of synonymous codon usage in classical swine fever virus

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5998877

Virus attenuation by genome-scale changes in codon pair bias

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5998877

Patterns of evolution and host gene mimicry in influenza and other RNA viruses

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5998877

Modulation of poliovirus replicative fitness in HeLa cells by deoptimization of synonymous codon usage in the capsid region.

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5998877

Base-stacking and base-pairing contributions into thermal stability of the DNA double helix

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5998877

Long-Range RNA-RNA Interactions Circularize the Dengue Virus Genome

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5998877

Codon usage bias from tRNA's point of view: redundancy, specialization, and efficient decoding for translation optimization

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5998877

Rates of molecular evolution in RNA viruses: a quantitative phylogenetic analysis

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5998877

Evolution of base composition and codon usage bias in the genus Flavivirus

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5998877

Viral vectors for gene therapy: the art of turning infectious agents into vehicles of therapeutics

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5998877

Identification of a cis-acting replication element within the poliovirus coding region

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5998877

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5998877

The evolution of virulence

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5998877

Why is CpG suppressed in the genomes of virtually all small eukaryotic viruses but not in those of large eukaryotic viruses?

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5998877

Dinucleotide relative abundance extremes: a genomic signature

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5998877

AT base pairs are less stable than GC base pairs in Z-DNA: the crystal structure of d(m5CGTAm5CG)

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5998877

Rapid evolution of RNA viruses

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5998877

The 'effective number of codons' used in a gene

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5998877

The characteristics of the synonymous codon usage in enterovirus 71 virus and the effects of host on the virus in codon usage pattern

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5998877

Analysis of synonymous codon usage in foot-and-mouth disease virus

13 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5998877

Analysis of synonymous codon usage in the UL24 gene of duck enteritis virus

13 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5998877

Synonymous codon usage in adenoviruses: influence of mutation, selection and protein hydropathy

13 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5998877

Analysis of synonymous codon usage in SARS Coronavirus and other viruses in the Nidovirales.

13 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5998877

Database resources of the National Center for Biotechnology Information

13 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5998877

Dinucleotide and stop codon frequencies in single-stranded RNA viruses

2 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/29745863

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/S12859-018-2132-3

1 reference

8 July 2018

journals/bmcbi/GozTBZAAJT18

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

8 July 2018

PubMed ID

29745863

1 reference

8 July 2018