(Q54420293)

29 May 2018

title

Polyadenylation site-induced decay of upstream transcripts enforces promoter directionality. (English)

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29 May 2018

Determinants of mammalian transcription start site selection and core promoter usage

sponsor

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Villum Foundation

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Danish Cancer Society

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Novo Nordisk Fonden

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Lundbeck Foundation

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University of Luxembourg

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German Research Foundation

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author

Mette Jørgensen

6

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29 May 2018

Robin Andersson

7

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29 May 2018

Eivind Valen

13

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29 May 2018

Vicent Pelechano

15

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29 May 2018

Albin Sandelin

17

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29 May 2018

Torben Heick Jensen

18

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29 May 2018

Evgenia Ntini

object named as

Evgenia Ntini

1

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Lars M Steinmetz

object named as

Lars M Steinmetz

16

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author name string

Aino I Järvelin

2

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29 May 2018

Jette Bornholdt

3

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29 May 2018

Yun Chen

4

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29 May 2018

Mette Boyd

5

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29 May 2018

Ilka Hoof

8

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29 May 2018

Aleks Schein

9

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29 May 2018

Peter R Andersen

10

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29 May 2018

Pia K Andersen

11

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29 May 2018

Pascal Preker

12

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29 May 2018

Xiaobei Zhao

14

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29 May 2018

publication date

14 July 2013

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29 May 2018

Nature Structural & Molecular Biology

published in

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29 May 2018

volume

20

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29 May 2018

page(s)

923-928

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29 May 2018

issue

8

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29 May 2018

https://scigraph.springernature.com/pub.10.1038/nsmb.2640

exact match

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cites work

Post-transcriptional processing generates a diversity of 5'-modified long and short RNAs

1 reference

The complex eukaryotic transcriptome: unexpected pervasive transcription and novel small RNAs

21 January 2018

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Divergent transcription from active promoters

21 January 2018

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Tiny RNAs associated with transcription start sites in animals.

21 January 2018

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RNA maps reveal new RNA classes and a possible function for pervasive transcription

21 January 2018

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Divergent transcription of long noncoding RNA/mRNA gene pairs in embryonic stem cells

21 January 2018

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RNA exosome depletion reveals transcription upstream of active human promoters

21 January 2018

1 reference

Antisense RNA polymerase II divergent transcripts are P-TEFb dependent and substrates for the RNA exosome

21 January 2018

1 reference

PROMoter uPstream Transcripts share characteristics with mRNAs and are produced upstream of all three major types of mammalian promoters

21 January 2018

1 reference

Pol II waiting in the starting gates: Regulating the transition from transcription initiation into productive elongation.

21 January 2018

1 reference

RNA polymerase II pausing downstream of core histone genes is different from genes producing polyadenylated transcripts

21 January 2018

1 reference

Unravelling the means to an end: RNA polymerase II transcription termination.

21 January 2018

1 reference

A quantitative atlas of polyadenylation in five mammals

21 January 2018

1 reference

Patterns of variant polyadenylation signal usage in human genes

21 January 2018

1 reference

A multispecies comparison of the metazoan 3'-processing downstream elements and the CstF-64 RNA recognition motif

21 January 2018

1 reference

Genome-wide analysis of pre-mRNA 3' end processing reveals a decisive role of human cleavage factor I in the regulation of 3' UTR length.

21 January 2018

1 reference

Transcriptome-wide analyses of CstF64-RNA interactions in global regulation of mRNA alternative polyadenylation

21 January 2018

1 reference

Ending the message: poly(A) signals then and now

21 January 2018

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Transcription termination by nuclear RNA polymerases

21 January 2018

1 reference

Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters

21 January 2018

1 reference

U1 snRNP protects pre-mRNAs from premature cleavage and polyadenylation

21 January 2018

1 reference

Defining the status of RNA polymerase at promoters

21 January 2018

1 reference

Cryptic pol II transcripts are degraded by a nuclear quality control pathway involving a new poly(A) polymerase

21 January 2018

1 reference

Progression through the RNA polymerase II CTD cycle

21 January 2018

1 reference

Widespread bidirectional promoters are the major source of cryptic transcripts in yeast

21 January 2018

1 reference

Bidirectional promoters generate pervasive transcription in yeast

21 January 2018

1 reference

Downstream elements of mammalian pre-mRNA polyadenylation signals: primary, secondary and higher-order structures.

21 January 2018

1 reference

Promoter-proximal polyadenylation sites reduce transcription activity.

21 January 2018

1 reference

CAGE (cap analysis of gene expression): a protocol for the detection of promoter and transcriptional networks

21 January 2018

1 reference

STAR: ultrafast universal RNA-seq aligner

21 January 2018

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Genome-wide polyadenylation site mapping

21 January 2018

1 reference

An efficient method for genome-wide polyadenylation site mapping and RNA quantification

21 January 2018

1 reference

Fast and SNP-tolerant detection of complex variants and splicing in short reads

21 January 2018

1 reference

Asap: a framework for over-representation statistics for transcription factor binding sites

21 January 2018

1 reference

JASPAR 2010: the greatly expanded open-access database of transcription factor binding profiles

21 January 2018

1 reference

Biogenic mechanisms and utilization of small RNAs derived from human protein-coding genes

21 January 2018

1 reference

Metazoan promoters: emerging characteristics and insights into transcriptional regulation

21 January 2018

1 reference

Phosphorylation of the RNA polymerase II C-terminal domain dictates transcription termination choice

31 March 2020

1 reference

31 March 2020

Identifiers

DOI

10.1038/NSMB.2640

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29 May 2018

PubMed ID

23851456

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29 May 2018