(Q54461719)

English

Nucleotide misincorporation, 3'-mismatch extension, and responses to abasic sites and DNA adducts by the polymerase component of bacterial DNA ligase D.

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scholarly article

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Europe PubMed Central

PubMed publication ID

30 May 2018

http://europepmc.org/abstract/MED/16816388

Nucleotide misincorporation, 3'-mismatch extension, and responses to abasic sites and DNA adducts by the polymerase component of bacterial DNA ligase D. (English)

1 reference

Europe PubMed Central

PubMed publication ID

30 May 2018

http://europepmc.org/abstract/MED/16816388

2

object named as

Stewart Shuman

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Europe PubMed Central

PubMed publication ID

30 May 2018

author name string

Lyudmila Yakovleva

1

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Europe PubMed Central

PubMed publication ID

30 May 2018

http://europepmc.org/abstract/MED/16816388

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publication date

30 June 2006

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Europe PubMed Central

PubMed publication ID

30 May 2018

http://europepmc.org/abstract/MED/16816388

Journal of Biological Chemistry

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Europe PubMed Central

PubMed publication ID

30 May 2018

http://europepmc.org/abstract/MED/16816388

281

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Europe PubMed Central

PubMed publication ID

30 May 2018

http://europepmc.org/abstract/MED/16816388

35

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Europe PubMed Central

PubMed publication ID

30 May 2018

http://europepmc.org/abstract/MED/16816388

25026-25040

1 reference

Europe PubMed Central

PubMed publication ID

30 May 2018

http://europepmc.org/abstract/MED/16816388

Biochemical and genetic analysis of the four DNA ligases of mycobacteria

1 reference

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Identification of a DNA nonhomologous end-joining complex in bacteria

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Mycobacterial Ku and ligase proteins constitute a two-component NHEJ repair machine

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A primer-dependent polymerase function of pseudomonas aeruginosa ATP-dependent DNA ligase (LigD)

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Novel 3'-ribonuclease and 3'-phosphatase activities of the bacterial non-homologous end-joining protein, DNA ligase D

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Essential constituents of the 3'-phosphoesterase domain of bacterial DNA ligase D, a nonhomologous end-joining enzyme

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Domain structure of a NHEJ DNA repair ligase from Mycobacterium tuberculosis

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Atomic structure and nonhomologous end-joining function of the polymerase component of bacterial DNA ligase D

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Crystal structure and nonhomologous end-joining function of the ligase component of Mycobacterium DNA ligase D.

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Crystal structure of a DNA-dependent RNA polymerase (DNA primase)

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Crystal structure of the Pyrococcus horikoshii DNA primase-UTP complex: implications for the mechanism of primer synthesis

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Structure of a bifunctional DNA primase-polymerase

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Structure of the heterodimeric core primase

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Human DNA primase uses Watson-Crick hydrogen bonds to distinguish between correct and incorrect nucleoside triphosphates

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Archaeal primase

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The DNA primase of Sulfolobus solfataricus is activated by substrates containing a thymine-rich bubble and has a 3'-terminal nucleotidyl-transferase activity

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The archaeal DNA primase: biochemical characterization of the p41-p46 complex from Pyrococcus furiosus.

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21 January 2018

Distinct domain functions regulating de novo DNA synthesis of thermostable DNA primase from hyperthermophile Pyrococcus horikoshii.

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21 January 2018

The heterodimeric primase of the hyperthermophilic archaeon Sulfolobus solfataricus possesses DNA and RNA primase, polymerase and 3'-terminal nucleotidyl transferase activities

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21 January 2018

Eukaryotic translesion synthesis DNA polymerases: specificity of structure and function

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Roles of yeast DNA polymerases delta and zeta and of Rev1 in the bypass of abasic sites

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The relative roles in vivo of Saccharomyces cerevisiae Pol eta, Pol zeta, Rev1 protein and Pol32 in the bypass and mutation induction of an abasic site, T-T (6-4) photoadduct and T-T cis-syn cyclobutane dimer

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NMR solution structures of stereoisometric covalent polycyclic aromatic carcinogen-DNA adduct: principles, patterns, and diversity

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Error-prone translesion synthesis by human DNA polymerase eta on DNA-containing deoxyadenosine adducts of 7,8-dihydroxy-9,10-epoxy-7,8,9,10-tetrahydrobenzo[a]pyrene

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Crystal structure of a benzo[a]pyrene diol epoxide adduct in a ternary complex with a DNA polymerase

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21 January 2018

Structure of a high fidelity DNA polymerase bound to a benzo[a]pyrene adduct that blocks replication

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21 January 2018

Benzo[a]pyrene-dG adduct interference illuminates the interface of vaccinia topoisomerase with the DNA minor groove

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21 January 2018

Benzo[c]phenanthrene adducts and nogalamycin inhibit DNA transesterification by vaccinia topoisomerase

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21 January 2018

Solution conformation of the (-)-trans-anti-benzo[c]phenanthrene-dA ([BPh]dA) adduct opposite dT in a DNA duplex: intercalation of the covalently attached benzo[c]phenanthrenyl ring to the 3'-side of the adduct site and comparison with the (+)-trans

1 reference

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A novel regulatory mechanism couples deoxyribonucleotide synthesis and DNA replication in Escherichia coli.

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Active site tightness and substrate fit in DNA replication

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Requirement of Watson-Crick hydrogen bonding for DNA synthesis by yeast DNA polymerase eta.

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Evidence for a Watson-Crick hydrogen bonding requirement in DNA synthesis by human DNA polymerase kappa

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DNA polymerase catalysis in the absence of Watson-Crick hydrogen bonds: analysis by single-turnover kinetics

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Snapshots of replication through an abasic lesion; structural basis for base substitutions and frameshifts

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Low fidelity DNA synthesis by a y family DNA polymerase due to misalignment in the active site.

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Identifiers

10.1074/JBC.M603302200

1 reference

Europe PubMed Central

PubMed publication ID

30 May 2018

http://europepmc.org/abstract/MED/16816388

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

30 May 2018

http://europepmc.org/abstract/MED/16816388

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