(Q54957010)

English

The polyphyly of Plasmodium: comprehensive phylogenetic analyses of the malaria parasites (order Haemosporida) reveal widespread taxonomic conflict.

scientific article

The polyphyly of : comprehensive phylogenetic analyses of the malaria parasites (order Haemosporida) reveal widespread taxonomic conflict

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31 March 2020

The polyphyly of Plasmodium: comprehensive phylogenetic analyses of the malaria parasites (order Haemosporida) reveal widespread taxonomic conflict (English)

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31 March 2020

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Spencer C Galen

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31 March 2020

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Susan L Perkins

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31 March 2020

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Ellen S Martinsen

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Christopher C Austin

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31 March 2020

Christopher J West

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23 May 2018

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31 March 2020

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31 March 2020

171780

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31 March 2020

Epauletted fruit bats display exceptionally high infections with a Hepatocystis species complex in South Sudan

1 reference

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16 June 2018

Parasite genomics-Time to think bigger

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The transcriptome of the avian malaria parasite Plasmodium ashfordi displays host-specific gene expression

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16 June 2018

Plasmodium malariae and P. ovale genomes provide insights into malaria parasite evolution

1 reference

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16 June 2018

A novel Haemosporida clade at the rank of genus in North American cranes (Aves: Gruiformes).

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16 June 2018

Highly rearranged mitochondrial genome in Nycteria parasites (Haemosporidia) from bats

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16 June 2018

A Modern Menagerie of Mammalian Malaria

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Hidden in plain sight: Cryptic and endemic malaria parasites in North American white-tailed deer (Odocoileus virginianus).

1 reference

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Diverse sampling of East African haemosporidians reveals chiropteran origin of malaria parasites in primates and rodents

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Haemosporidian Parasites of Antelopes and Other Vertebrates from Gabon, Central Africa

1 reference

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16 June 2018

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1 reference

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16 June 2018

Phylogeny of haemosporidian blood parasites revealed by a multi-gene approach

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16 June 2018

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16 June 2018

Nycteria parasites of Afrotropical insectivorous bats.

1 reference

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16 June 2018

The evolution of genomic GC content undergoes a rapid reversal within the genus Plasmodium

1 reference

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16 June 2018

A new method for estimating species age supports the coexistence of malaria parasites and their Mammalian hosts

1 reference

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16 June 2018

ASTRAL: genome-scale coalescent-based species tree estimation

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16 June 2018

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

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16 June 2018

High diversity of West African bat malaria parasites and a tight link with rodent Plasmodium taxa.

1 reference

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16 June 2018

Malaria's many mates: past, present, and future of the systematics of the order Haemosporida

1 reference

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16 June 2018

Revision of hemoproteid genera and description and redescription of two species of chelonian hemoproteid parasites

1 reference

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16 June 2018

Diversity, host switching and evolution of Plasmodium vivax infecting African great apes

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16 June 2018

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

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16 June 2018

Serine codon-usage bias in deep phylogenomics: pancrustacean relationships as a case study

1 reference

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16 June 2018

Bayesian phylogenetics with BEAUti and the BEAST 1.7

1 reference

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16 June 2018

The evolutionary host switches of Polychromophilus: a multi-gene phylogeny of the bat malaria genus suggests a second invasion of mammals by a haemosporidian parasite

1 reference

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16 June 2018

Detecting the symplesiomorphy trap: a multigene phylogenetic analysis of terebelliform annelids

1 reference

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16 June 2018

Hematozoa and a new haemoproteid species from Cathartidae (New World vulture) in South Carolina.

1 reference

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16 June 2018

Rerooting the evolutionary tree of malaria parasites

1 reference

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16 June 2018

Phylogenomic analyses of malaria parasites and evolution of their exported proteins

1 reference

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16 June 2018

Synonymous but not the same: the causes and consequences of codon bias

1 reference

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16 June 2018

Origin of the human malaria parasite Plasmodium falciparum in gorillas

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16 June 2018

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1 reference

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16 June 2018

Sources of Error Inherent in Species-Tree Estimation: Impact of Mutational and Coalescent Effects on Accuracy and Implications for Choosing among Different Methods

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16 June 2018

The Ascomycota tree of life: a phylum-wide phylogeny clarifies the origin and evolution of fundamental reproductive and ecological traits

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16 June 2018

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16 June 2018

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16 June 2018

On the diversity of malaria parasites in African apes and the origin of Plasmodium falciparum from Bonobos

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16 June 2018

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16 June 2018

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16 June 2018

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16 June 2018

Saturation and base composition bias explain phylogenomic conflict in Plasmodium.

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Out of Hawaii: the origin and biogeography of the genus Scaptomyza (Diptera: Drosophilidae)

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16 June 2018

A three-genome phylogeny of malaria parasites (Plasmodium and closely related genera): evolution of life-history traits and host switches

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16 June 2018

Multiple host-switching of Haemosporidia parasites in bats

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GEIGER: investigating evolutionary radiations

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16 June 2018

The supermatrix approach to systematics

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16 June 2018

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16 June 2018

Genome sequence of the human malaria parasite Plasmodium falciparum

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16 June 2018

Increased taxon sampling greatly reduces phylogenetic error

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16 June 2018

Compositional bias may affect both DNA-based and protein-based phylogenetic reconstructions.

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16 June 2018

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16 June 2018

Divergent evolutionary constraints on mitochondrial and nuclear genomes of malaria parasites

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16 June 2018

The evolution of primate malaria parasites based on the gene encoding cytochrome b from the linear mitochondrial genome

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16 June 2018

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16 June 2018

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16 June 2018

Comparison of circumsporozoite proteins from avian and mammalian malarias: biological and phylogenetic implications.

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16 June 2018

Phylogeny of the malarial genus Plasmodium, derived from rRNA gene sequences

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16 June 2018

The extrachromosomal DNAs of apicomplexan parasites

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16 June 2018

Evolutionary origin of human and primate malarias: evidence from the circumsporozoite protein gene

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16 June 2018

Codon usage in yeast: cluster analysis clearly differentiates highly and lowly expressed genes

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16 June 2018

The 'effective number of codons' used in a gene

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16 June 2018

Substitutional bias confounds inference of cyanelle origins from sequence data

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16 June 2018

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16 June 2018

Complete avian malaria parasite genomes reveal features associated with lineage-specific evolution in birds and mammals.

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13 August 2018

Parasitaemia data and molecular characterization of Haemoproteus catharti from New World vultures (Cathartidae) reveals a novel clade of Haemosporida.

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13 August 2018

Mode and rate of evolution of haemosporidian mitochondrial genomes: timing the radiation of avian parasites

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13 August 2018

PartitionFinder 2: New Methods for Selecting Partitioned Models of Evolution for Molecular and Morphological Phylogenetic Analyses

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13 August 2018

Mitochondrial phylogenomics of early land plants: mitigating the effects of saturation, compositional heterogeneity, and codon-usage bias

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13 August 2018

A linear-time algorithm for Gaussian and non-Gaussian trait evolution models.

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13 August 2018

Inferring ancient divergences requires genes with strong phylogenetic signals.

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13 August 2018

A new method for isolation of purified genomic DNA from haemosporidian parasites inhabiting nucleated red blood cells

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13 August 2018

Phylogenetics of Chondrichthyes and the problem of rooting phylogenies with distant outgroups

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13 August 2018

The developmental cycle of Hepatocystes (Plasmodium) kochi in the monkey host.

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13 August 2018

Phylogenetic artifacts can be caused by leucine, serine, and arginine codon usage heterogeneity: dinoflagellate plastid origins as a case study

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5990803

13 August 2018

Studies on malaria in chimpanzees. VI. Laverania falciparum.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5990803

13 August 2018

Nucleotide bias causes a genomewide bias in the amino acid composition of proteins.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5990803

13 August 2018

Tree rooting with outgroups when they differ in their nucleotide composition from the ingroup: the Drosophila saltans and willistoni groups, a case study

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5990803

13 August 2018

Bias in phylogenetic reconstruction of vertebrate rhodopsin sequences.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5990803

13 August 2018

Phylogenetic relationship among the malaria parasites based on small subunit rRNA gene sequences: monophyletic nature of the human malaria parasite, Plasmodium falciparum

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5990803

13 August 2018

On the status of the genera Leucocytozoon Ziemann, 1893 and Haemoproteus Kruse, 1890 (Haemosporidiida: Leucocytozoidae and Haemoproteidae)

1 reference

https://pubmed.ncbi.nlm.nih.gov/29892372

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The evolution of base composition and phylogenetic inference

1 reference

https://pubmed.ncbi.nlm.nih.gov/29892372

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

On a new blood parasite of insectivorous bats

1 reference

https://pubmed.ncbi.nlm.nih.gov/29892372

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The Biasing Effect of Compositional Heterogeneity on Phylogenetic Estimates May be Underestimated

1 reference

https://pubmed.ncbi.nlm.nih.gov/29892372

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1098/RSOS.171780

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29892372%20AND%20SRC:MED&resulttype=core&format=json

31 March 2020

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29892372%20AND%20SRC:MED&resulttype=core&format=json

31 March 2020

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29892372%20AND%20SRC:MED&resulttype=core&format=json

31 March 2020

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