(Q56395621)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29969450%20AND%20SRC:MED&resulttype=core&format=json

4 April 2020

title

CellProfiler 3.0: Next-generation image processing for biology (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29969450%20AND%20SRC:MED&resulttype=core&format=json

4 April 2020

0 references

0 references

0 references

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29969450%20AND%20SRC:MED&resulttype=core&format=json

4 April 2020

author name string

Claire McQuin

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29969450%20AND%20SRC:MED&resulttype=core&format=json

4 April 2020

Allen Goodman

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29969450%20AND%20SRC:MED&resulttype=core&format=json

4 April 2020

Lee Kamentsky

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29969450%20AND%20SRC:MED&resulttype=core&format=json

4 April 2020

Beth A Cimini

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29969450%20AND%20SRC:MED&resulttype=core&format=json

4 April 2020

Kyle W Karhohs

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29969450%20AND%20SRC:MED&resulttype=core&format=json

4 April 2020

Minh Doan

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29969450%20AND%20SRC:MED&resulttype=core&format=json

4 April 2020

Liya Ding

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29969450%20AND%20SRC:MED&resulttype=core&format=json

4 April 2020

Susanne M Rafelski

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29969450%20AND%20SRC:MED&resulttype=core&format=json

4 April 2020

Derek Thirstrup

10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29969450%20AND%20SRC:MED&resulttype=core&format=json

4 April 2020

Winfried Wiegraebe

11

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29969450%20AND%20SRC:MED&resulttype=core&format=json

4 April 2020

Shantanu Singh

12

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29969450%20AND%20SRC:MED&resulttype=core&format=json

4 April 2020

Tim Becker

13

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29969450%20AND%20SRC:MED&resulttype=core&format=json

4 April 2020

Juan C Caicedo

14

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29969450%20AND%20SRC:MED&resulttype=core&format=json

4 April 2020

Anne E Carpenter

15

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29969450%20AND%20SRC:MED&resulttype=core&format=json

4 April 2020

language of work or name

English

0 references

publication date

3 July 2018

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29969450%20AND%20SRC:MED&resulttype=core&format=json

4 April 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29969450%20AND%20SRC:MED&resulttype=core&format=json

4 April 2020

volume

16

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29969450%20AND%20SRC:MED&resulttype=core&format=json

4 April 2020

issue

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29969450%20AND%20SRC:MED&resulttype=core&format=json

4 April 2020

page(s)

e2005970

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29969450%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution 4.0 International

4 April 2020

copyright license

start time

3 July 2018

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

describes a project that uses

Jupyter notebook file

1 reference

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6029841/

CellProfiler

object named as

CellProfiler

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

cites work

Assessing microscope image focus quality with deep learning.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6029841

ImageJ2: ImageJ for the next generation of scientific image data

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6029841

Image-based ex-vivo drug screening for patients with aggressive haematological malignancies: interim results from a single-arm, open-label, pilot study

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6029841

An objective comparison of cell-tracking algorithms.

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6029841

Data-analysis strategies for image-based cell profiling.

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6029841

Systematic gene tagging using CRISPR/Cas9 in human stem cells to illuminate cell organization

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6029841

Automated Training of Deep Convolutional Neural Networks for Cell Segmentation.

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6029841

KNIME for reproducible cross-domain analysis of life science data

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6029841

Systematic morphological profiling of human gene and allele function via Cell Painting.

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6029841

MitoGen: A Framework for Generating 3D Synthetic Time-Lapse Sequences of Cell Populations in Fluorescence Microscopy.

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6029841

Cell Painting, a high-content image-based assay for morphological profiling using multiplexed fluorescent dyes.

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6029841

CellProfiler Analyst: interactive data exploration, analysis and classification of large biological image sets

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6029841

IMAGING. 'Cell painting' highlights responses to drugs and toxins.

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6029841

Applications in image-based profiling of perturbations

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6029841

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6029841

Ebola virus. Two-pore channels control Ebola virus host cell entry and are drug targets for disease treatment

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6029841

Strategy for identifying repurposed drugs for the treatment of cerebral cavernous malformation.

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6029841

Review of free software tools for image analysis of fluorescence cell micrographs

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6029841

Identification of host-targeted small molecules that restrict intracellular Mycobacterium tuberculosis growth

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6029841

Niche-based screening identifies small-molecule inhibitors of leukemia stem cells

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6029841

Identification of regulators of polyploidization presents therapeutic targets for treatment of AMKL

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6029841

Biological imaging software tools

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6029841

Annotated high-throughput microscopy image sets for validation

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6029841

Visualization and analysis of 3D microscopic images

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6029841

Improved structure, function and compatibility for CellProfiler: modular high-throughput image analysis software

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6029841

Generation of digital phantoms of cell nuclei and simulation of image formation in 3D image cytometry

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6029841

CellProfiler: image analysis software for identifying and quantifying cell phenotypes

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6029841

Blastocyst-like structures generated solely from stem cells

29 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/29969450

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Caffe: Convolutional Architecture for Fast Feature Embedding

1 reference

19 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1371/JOURNAL.PBIO.2005970

U-Net: Convolutional Networks for Biomedical Image Segmentation

1 reference

19 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1371/JOURNAL.PBIO.2005970

Identifiers

DOI

10.1371/JOURNAL.PBIO.2005970

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29969450%20AND%20SRC:MED&resulttype=core&format=json

4 April 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29969450%20AND%20SRC:MED&resulttype=core&format=json

4 April 2020

PubMed publication ID

29969450

1 reference