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Ambiguous NOEs and automated NOE assignment
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instance of
scholarly article
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title
Ambiguous NOEs and automated NOE assignment
(English)
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main subject
automation
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author
Michael Nilges
object named as
Michael Nilges
series ordinal
1
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author name string
Seán I. O'Donoghue
series ordinal
2
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publication date
April 1998
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published in
Progress in Nuclear Magnetic Resonance Spectroscopy
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volume
32
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page(s)
107-139
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issue
2
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cites work
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based on heuristic
inferred from DOI database lookup
Determination of three-dimensional structures of proteins from interproton distance data by hybrid distance geometry-dynamical simulated annealing calculations
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0079-6565%2897%2900025-3
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Global fold determination from a small number of distance restraints
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0079-6565%2897%2900025-3
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
The NMR solution structure of intestinal fatty acid-binding protein complexed with palmitate: application of a novel distance geometry algorithm
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0079-6565%2897%2900025-3
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Determination of three-dimensional structures of proteins from interproton distance data by dynamical simulated annealing from a random array of atoms. Circumventing problems associated with folding
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0079-6565%2897%2900025-3
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
New applications of simulated annealing in X-ray crystallography and solution NMR.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0079-6565%2897%2900025-3
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Optimization by Simulated Annealing
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0079-6565%2897%2900025-3
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Equation of State Calculations by Fast Computing Machines
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0079-6565%2897%2900025-3
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Biased probability Monte Carlo conformational searches and electrostatic calculations for peptides and proteins
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0079-6565%2897%2900025-3
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Structure determination from NOESY intensities using a metropolis simulated-annealing (MSA) refinement of dihedral angles.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0079-6565%2897%2900025-3
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Metropolis Monte Carlo calculations of DNA structure using internal coordinates and NMR distance restraints: an alternative method for generating a high-resolution solution structure.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0079-6565%2897%2900025-3
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Protein folding by restrained energy minimization and molecular dynamics
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0079-6565%2897%2900025-3
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
A protein structure from nuclear magnetic resonance data. lac repressor headpiece
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0079-6565%2897%2900025-3
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Solution conformation of a heptadecapeptide comprising the DNA binding helix F of the cyclic AMP receptor protein of Escherichia coli. Combined use of 1H nuclear magnetic resonance and restrained molecular dynamics.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0079-6565%2897%2900025-3
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Solution structure of the EcoRI DNA sequence: refinement of NMR-derived distance geometry structures by NOESY spectrum back-calculations
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0079-6565%2897%2900025-3
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
A structure refinement method based on molecular dynamics in four spatial dimensions.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0079-6565%2897%2900025-3
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Intrinsic nature of the three-dimensional structure of proteins as determined by distance geometry with good sampling properties.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0079-6565%2897%2900025-3
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Computer "Experiments" on Classical Fluids. I. Thermodynamical Properties of Lennard-Jones Molecules
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0079-6565%2897%2900025-3
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Molecular dynamics with coupling to an external bath
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0079-6565%2897%2900025-3
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
A reduced representation of proteins for use in restraint satisfaction calculations
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0079-6565%2897%2900025-3
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Sampling and efficiency of metric matrix distance geometry: a novel partial metrization algorithm.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0079-6565%2897%2900025-3
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
The conformation of loop E of eukaryotic 5S ribosomal RNA.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0079-6565%2897%2900025-3
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Structure of the polyadenylation regulatory element of the human U1A pre-mRNA 3'-untranslated region and interaction with the U1A protein
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0079-6565%2897%2900025-3
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Torsion angle dynamics: reduced variable conformational sampling enhances crystallographic structure refinement
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0079-6565%2897%2900025-3
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
New methodology for computer-aided modelling of biomolecular structure and dynamics. 1. Non-cyclic structures
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0079-6565%2897%2900025-3
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Protein simulations using techniques suitable for very large systems: the cell multipole method for nonbond interactions and the Newton-Euler inverse mass operator method for internal coordinate dynamics
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0079-6565%2897%2900025-3
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Knowledge-based validation of protein structure coordinates derived by X-ray crystallography and NMR spectroscopy
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0079-6565%2897%2900025-3
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
AQUA and PROCHECK-NMR: programs for checking the quality of protein structures solved by NMR
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0079-6565%2897%2900025-3
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
"Ensemble" iterative relaxation matrix approach: a new NMR refinement protocol applied to the solution structure of crambin
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0079-6565%2897%2900025-3
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Loop mobility in a four-helix-bundle protein: nitrogen-15 NMR relaxation measurements on human interleukin-4
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0079-6565%2897%2900025-3
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
High-resolution structure of an HIV zinc fingerlike domain via a new NMR-based distance geometry approach
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0079-6565%2897%2900025-3
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Solution structure of omega-conotoxin MVIIC, a high affinity ligand of P-type calcium channels, using 1H NMR spectroscopy and complete relaxation matrix analysis
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0079-6565%2897%2900025-3
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Accurate bond and angle parameters for X-ray protein structure refinement
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0079-6565%2897%2900025-3
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Deviations from planarity of the peptide bond in peptides and proteins
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0079-6565%2897%2900025-3
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
The new program OPAL for molecular dynamics simulations and energy refinements of biological macromolecules
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0079-6565%2897%2900025-3
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Assessing the quality of solution nuclear magnetic resonance structures by complete cross-validation.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0079-6565%2897%2900025-3
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Recognition of errors in three-dimensional structures of proteins
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0079-6565%2897%2900025-3
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Protein dynamics and distance determination by NOE measurements.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0079-6565%2897%2900025-3
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
The OPLS [optimized potentials for liquid simulations] potential functions for proteins, energy minimizations for crystals of cyclic peptides and crambin.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0079-6565%2897%2900025-3
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Improving the quality of NMR and crystallographic protein structures by means of a conformational database potential derived from structure databases
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0079-6565%2897%2900025-3
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
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10.1016/S0079-6565(97)00025-3
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