(Q57142500)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30271673%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

title

Effects of 3D culturing conditions on the transcriptomic profile of stem-cell-derived neurons (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30271673%20AND%20SRC:MED&resulttype=core&format=json

single cell transcriptomics

25 April 2020

main subject

transcriptome

0 references

1 reference

A curated database reveals trends in single-cell transcriptomics

https://www.nxn.se/single-cell-studies/data.tsv

7 February 2021

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30271673%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

Joshua Levin

16

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30271673%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

8

Danielle Dionne

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30271673%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

author name string

Halil Tekin

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30271673%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

Sean Simmons

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30271673%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

Beryl Cummings

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30271673%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

Xian Adiconis

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30271673%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

Cynthia C Hession

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30271673%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

Ayan Ghoshal

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30271673%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

Sourav R Choudhury

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30271673%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

Volkan Yesilyurt

10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30271673%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

Neville E Sanjana

11

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30271673%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

Xi Shi

12

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30271673%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

Congyi Lu

13

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30271673%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

Matthias Heidenreich

14

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30271673%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

Jen Q Pan

15

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30271673%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

Feng Zhang

17

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30271673%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

language of work or name

English

0 references

publication date

9 April 2018

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30271673%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

volume

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30271673%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

page(s)

540-554

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30271673%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

issue

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30271673%20AND%20SRC:MED&resulttype=core&format=json

describes a project that uses

25 April 2020

cell culture

1 reference

A curated database reveals trends in single-cell transcriptomics

7 February 2021

https://www.nxn.se/single-cell-studies/data.tsv

cites work

Spatiotemporal gene expression trajectories reveal developmental hierarchies of the human cortex

1 reference

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Massively parallel single-nucleus RNA-seq with DroNc-seq

2 November 2018

1 reference

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Engineered Cpf1 variants with altered PAM specificities

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6157920

Cell diversity and network dynamics in photosensitive human brain organoids.

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6157920

Anisotropically organized three-dimensional culture platform for reconstruction of a hippocampal neural network

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6157920

ApoE2, ApoE3, and ApoE4 Differentially Stimulate APP Transcription and Aβ Secretion

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6157920

Massively parallel digital transcriptional profiling of single cells

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6157920

Functional Maturation of Human Stem Cell-Derived Neurons in Long-Term Cultures

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6157920

Multiplex gene editing by CRISPR-Cpf1 using a single crRNA array

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6157920

The promises and challenges of human brain organoids as models of neuropsychiatric disease

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6157920

Comprehensive Classification of Retinal Bipolar Neurons by Single-Cell Transcriptomics

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6157920

Brain-Region-Specific Organoids Using Mini-bioreactors for Modeling ZIKV Exposure

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6157920

Generation and transplantation of reprogrammed human neurons in the brain using 3D microtopographic scaffolds

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6157920

Autism-associated SHANK3 haploinsufficiency causes Ih channelopathy in human neurons

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6157920

Human cerebral organoids recapitulate gene expression programs of fetal neocortex development

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6157920

Hydrogels with tunable stress relaxation regulate stem cell fate and activity.

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6157920

Cpf1 is a single RNA-guided endonuclease of a class 2 CRISPR-Cas system

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6157920

An atlas of genetic correlations across human diseases and traits

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6157920

Molecular identity of human outer radial glia during cortical development

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6157920

Human pluripotent stem cell-derived neural constructs for predicting neural toxicity

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6157920

The genetic landscape of Alzheimer disease: clinical implications and perspectives

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6157920

Alginate-hyaluronan composite hydrogels accelerate wound healing process.

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6157920

Functional cortical neurons and astrocytes from human pluripotent stem cells in 3D culture

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6157920

Spatial reconstruction of single-cell gene expression data

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6157920

Haploinsufficiency of TBK1 causes familial ALS and fronto-temporal dementia

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6157920

Human ESC-derived dopamine neurons show similar preclinical efficacy and potency to fetal neurons when grafted in a rat model of Parkinson's disease

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6157920

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6157920

Rapid neurogenesis through transcriptional activation in human stem cells.

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6157920

A three-dimensional human neural cell culture model of Alzheimer's disease

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6157920

Generation of induced neuronal cells by the single reprogramming factor ASCL1

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6157920

Bioengineered functional brain-like cortical tissue

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6157920

Large-scale meta-analysis of genome-wide association data identifies six new risk loci for Parkinson's disease

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6157920

Extracellular matrix stiffness and composition jointly regulate the induction of malignant phenotypes in mammary epithelium.

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6157920

Single-cell RNA-seq highlights intratumoral heterogeneity in primary glioblastoma

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6157920

Genome-scale neurogenetics: methodology and meaning

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6157920

Neural differentiation of pluripotent cells in 3D alginate-based cultures.

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6157920

Full-length RNA-seq from single cells using Smart-seq2.

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6157920

State of play in amyotrophic lateral sclerosis genetics

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6157920

Meta-analysis of 74,046 individuals identifies 11 new susceptibility loci for Alzheimer's disease

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6157920

Cerebral organoids model human brain development and microcephaly

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6157920

Pathophysiology of the brain extracellular matrix: a new target for remyelination.

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6157920

Rapid single-step induction of functional neurons from human pluripotent stem cells

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6157920

Astroglial cells regulate the developmental timeline of human neurons differentiated from induced pluripotent stem cells

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6157920

Degradation-mediated cellular traction directs stem cell fate in covalently crosslinked three-dimensional hydrogels

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6157920

Efficient generation of astrocytes from human pluripotent stem cells in defined conditions

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6157920

STAR: ultrafast universal RNA-seq aligner

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6157920

ALSoD: A user-friendly online bioinformatics tool for amyotrophic lateral sclerosis genetics.

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6157920

Combined fulminant frontotemporal dementia and amyotrophic lateral sclerosis associated with an I113T SOD1 mutation

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6157920

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6157920

Keeping up with genetic discoveries in amyotrophic lateral sclerosis: the ALSoD and ALSGene databases

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6157920

Induction of human neuronal cells by defined transcription factors

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6157920

Hyaluronic acid hydrogels for biomedical applications

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6157920

TDP-43 and FUS in amyotrophic lateral sclerosis and frontotemporal dementia

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6157920

Harnessing traction-mediated manipulation of the cell/matrix interface to control stem-cell fate.

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6157920

The effects of hyaluronic acid hydrogels with tunable mechanical properties on neural progenitor cell differentiation.

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6157920

Mechanically robust and bioadhesive collagen and photocrosslinkable hyaluronic acid semi-interpenetrating networks

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6157920

Induced pluripotent stem cells generated from patients with ALS can be differentiated into motor neurons

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6157920

GSEA-P: a desktop application for Gene Set Enrichment Analysis.

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6157920

Enhanced neuronal differentiation in a three-dimensional collagen-hyaluronan matrix.

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6157920

Migration of tumor cells in 3D matrices is governed by matrix stiffness along with cell-matrix adhesion and proteolysis

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6157920

Hyaluronan accumulates in demyelinated lesions and inhibits oligodendrocyte progenitor maturation.

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6157920

Glycosaminoglycans of brain during development

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6157920

Genome-wide association studies: the key to unlocking neurodegeneration?

2 November 2018

1 reference

https://api.crossref.org/works/10.1038%2FS41551-018-0219-9

7 January 2021

Three-dimensional biomaterials for the study of human pluripotent stem cells

1 reference

https://api.crossref.org/works/10.1038%2FS41551-018-0219-9

7 January 2021

Swimming muscles power suction feeding in largemouth bass

1 reference

https://api.crossref.org/works/10.1038%2FS41551-018-0219-9

7 January 2021

Production of neurons, astrocytes and oligodendrocytes from mammalian CNS stem cells

1 reference

https://api.crossref.org/works/10.1038%2FS41551-018-0219-9

7 January 2021

10.1038/S41551-018-0219-9

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30271673%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30271673%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

1 reference