(Q57589985)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29761466%20AND%20SRC:MED&resulttype=core&format=json

26 March 2020

title

Using WormBase: A Genome Biology Resource for Caenorhabditis elegans and Related Nematodes (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29761466%20AND%20SRC:MED&resulttype=core&format=json

26 March 2020

main subject

Caenorhabditis elegans

1 reference

4

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26 March 2020

Todd Harris

5

1 reference

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26 March 2020

Kevin L Howe

6

1 reference

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26 March 2020

Michael Han

9

1 reference

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26 March 2020

Gareth W. Williams

13

1 reference

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26 March 2020

11

Mary Ann Tuli

1 reference

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26 March 2020

12

Kimberly Van Auken

1 reference

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26 March 2020

10

Daniela Raciti

1 reference

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26 March 2020

8

Raymond Lee

1 reference

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26 March 2020

author name string

Christian Grove

1

1 reference

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26 March 2020

Scott Cain

2

1 reference

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26 March 2020

Wen J Chen

3

1 reference

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26 March 2020

Ranjana Kishore

7

1 reference

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26 March 2020

WormBase Consortium

14

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26 March 2020

language of work or name

English

0 references

publication date

1 January 2018

1 reference

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Methods in Molecular Biology

26 March 2020

published in

1 reference

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26 March 2020

volume

1757

1 reference

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26 March 2020

page(s)

399-470

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Basic local alignment search tool

26 March 2020

cites work

1 reference

12 December 2020

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

1 reference

12 December 2020

Genome sequence of the nematode C. elegans: a platform for investigating biology

1 reference

12 December 2020

A role for Caenorhabditis elegans in understanding the function and interactions of human disease genes

1 reference

12 December 2020

BLAT—The BLAST-Like Alignment Tool

1 reference

12 December 2020

The generic genome browser: a building block for a model organism system database

1 reference

12 December 2020

Systematic functional analysis of the Caenorhabditis elegans genome using RNAi

1 reference

12 December 2020

MUSCLE: multiple sequence alignment with high accuracy and high throughput

1 reference

12 December 2020

Toward improving Caenorhabditis elegans phenome mapping with an ORFeome-based RNAi library

1 reference

12 December 2020

TreeFam: a curated database of phylogenetic trees of animal gene families

1 reference

12 December 2020

Genome-wide prediction of C. elegans genetic interactions

1 reference

12 December 2020

Caenorhabditis elegans: a versatile platform for drug discovery

1 reference

12 December 2020

FlyMine: an integrated database for Drosophila and Anopheles genomics

1 reference

12 December 2020

A single gene network accurately predicts phenotypic effects of gene perturbation in Caenorhabditis elegans.

1 reference

12 December 2020

Building a cell and anatomy ontology of Caenorhabditis elegans

1 reference

12 December 2020

EnsemblCompara GeneTrees: Complete, duplication-aware phylogenetic trees in vertebrates

1 reference

12 December 2020

JBrowse: a next-generation genome browser

1 reference

12 December 2020

BLAST+: architecture and applications

1 reference

12 December 2020

The Caenorhabditis elegans Werner syndrome protein functions upstream of ATR and ATM in response to DNA replication inhibition and double-strand DNA breaks.

1 reference

12 December 2020

High-throughput screening and small animal models, where are we?

1 reference

12 December 2020

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

1 reference

12 December 2020

Predicting genetic modifier loci using functional gene networks

1 reference

12 December 2020

Prion protein in Caenorhabditis elegans: Distinct models of anti-BAX and neuropathology

1 reference

12 December 2020

Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project

1 reference

12 December 2020

Worm Phenotype Ontology: integrating phenotype data within and beyond the C. elegans community

1 reference

12 December 2020

Temperature, oxygen, and salt-sensing neurons in C. elegans are carbon dioxide sensors that control avoidance behavior.

1 reference

12 December 2020

Caenorhabditis elegans as a model for obesity research

1 reference

12 December 2020

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

1 reference

12 December 2020

Disease Ontology: a backbone for disease semantic integration

1 reference

12 December 2020

modMine: flexible access to modENCODE data

1 reference

12 December 2020

Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation

1 reference

12 December 2020

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

1 reference

12 December 2020

YeastMine--an integrated data warehouse for Saccharomyces cerevisiae data as a multipurpose tool-kit.

1 reference

12 December 2020

InterMine: a flexible data warehouse system for the integration and analysis of heterogeneous biological data

1 reference

12 December 2020

The International Nucleotide Sequence Database Collaboration.

1 reference

12 December 2020

Modeling neurodegenerative diseases in Caenorhabditis elegans

1 reference

12 December 2020

WormBase 2014: new views of curated biology

1 reference

12 December 2020

Pfam: the protein families database

1 reference

12 December 2020

eggNOG v4.0: nested orthology inference across 3686 organisms

1 reference

12 December 2020

C. elegans in high-throughput drug discovery

1 reference

12 December 2020

Compartments within a compartment: what C. elegans can tell us about ciliary subdomain composition, biogenesis, function, and disease

1 reference

12 December 2020

InterMine: extensive web services for modern biology

1 reference

12 December 2020

A method for increasing expressivity of Gene Ontology annotations using a compositional approach

1 reference

12 December 2020

Mating behavior, male sensory cilia, and polycystins in Caenorhabditis elegans

1 reference

12 December 2020

Use of Caenorhabditis elegans as a model to study Alzheimer's disease and other neurodegenerative diseases

1 reference

12 December 2020

Disease Ontology 2015 update: an expanded and updated database of human diseases for linking biomedical knowledge through disease data

1 reference

12 December 2020

The GOA database: gene Ontology annotation updates for 2015

1 reference

12 December 2020

OMIM.org: Online Mendelian Inheritance in Man (OMIM®), an online catalog of human genes and genetic disorders

1 reference

12 December 2020

Gene Ontology Consortium: going forward

1 reference

12 December 2020

The InterPro protein families database: the classification resource after 15 years

1 reference

12 December 2020

MouseMine: a new data warehouse for MGI.

1 reference

12 December 2020

toxoMine: an integrated omics data warehouse for Toxoplasma gondii systems biology research.

1 reference

12 December 2020

WormBase 2016: expanding to enable helminth genomic research

1 reference

12 December 2020

WormBook: WormBiology for the 21st Century

1 reference

12 December 2020

Tissue enrichment analysis for C. elegans genomics

1 reference

12 December 2020

Expansion of the Gene Ontology knowledgebase and resources

1 reference

12 December 2020

10.1007/978-1-4939-7737-6_14

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29761466%20AND%20SRC:MED&resulttype=core&format=json

26 March 2020

1 reference

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26 March 2020

1 reference