(Q58550709)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30361341%20AND%20SRC:MED&resulttype=core&format=json

30 April 2020

title

The chromatin accessibility landscape of primary human cancers (English)

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30 April 2020

1

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30 April 2020

Shadi Shams

3

1 reference

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30 April 2020

Jose A. Seoane

5

1 reference

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30 April 2020

Tiago C Silva

7

1 reference

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30 April 2020

Clarice S Groeneveld

8

1 reference

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30 April 2020

Christopher K Wong

9

1 reference

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30 April 2020

Seung Woo Cho

10

1 reference

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30 April 2020

Katherine A. Hoadley

13

1 reference

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30 April 2020

Gordon Robertson

14

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30 April 2020

Nathan C. Sheffield

15

1 reference

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30 April 2020

Mauro A. Castro

17

1 reference

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30 April 2020

Benjamin P Berman

18

1 reference

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30 April 2020

Peter W Laird

21

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30 April 2020

William Greenleaf

24

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30 April 2020

author name string

Jeffrey M Granja

2

1 reference

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30 April 2020

Bryan H Louie

4

1 reference

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30 April 2020

Wanding Zhou

6

1 reference

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30 April 2020

Ansuman T Satpathy

11

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30 April 2020

Maxwell R Mumbach

12

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30 April 2020

Ina Felau

16

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30 April 2020

Louis M Staudt

19

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30 April 2020

Jean C Zenklusen

20

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30 April 2020

Christina Curtis

22

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30 April 2020

Howard Y Chang

25

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30 April 2020

Cancer Genome Atlas Analysis Network

23

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30 April 2020

language of work or name

English

0 references

publication date

1 October 2018

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30 April 2020

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30 April 2020

volume

362

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30 April 2020

issue

6413

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30361341%20AND%20SRC:MED&resulttype=core&format=json

The transcriptional repressor CDP (Cutl1) is essential for epithelial cell differentiation of the lung and the hair follicle

30 April 2020

cites work

1 reference

12 December 2020

Genome-wide association study of prostate cancer identifies a second risk locus at 8q24

1 reference

12 December 2020

A genome-wide association study identifies colorectal cancer susceptibility loci on chromosomes 10p14 and 8q23.3

1 reference

12 December 2020

Meta-analysis of gene expression profiles in breast cancer: toward a unified understanding of breast cancer subtyping and prognosis signatures

1 reference

12 December 2020

Integrated genotype calling and association analysis of SNPs, common copy number polymorphisms and rare CNVs

1 reference

12 December 2020

Supervised risk predictor of breast cancer based on intrinsic subtypes

1 reference

12 December 2020

The Sequence Alignment/Map format and SAMtools

1 reference

12 December 2020

Identification of a CpG island methylator phenotype that defines a distinct subgroup of glioma

1 reference

12 December 2020

Distinct epigenomic landscapes of pluripotent and lineage-committed human cells.

1 reference

12 December 2020

Tumors as organs: complex tissues that interface with the entire organism

1 reference

12 December 2020

Comparison of Beta-value and M-value methods for quantifying methylation levels by microarray analysis

1 reference

12 December 2020

Hallmarks of Cancer: The Next Generation

1 reference

12 December 2020

Genome-scale analysis of aberrant DNA methylation in colorectal cancer

1 reference

12 December 2020

Fast gapped-read alignment with Bowtie 2

1 reference

12 December 2020

Epigenomic enhancer profiling defines a signature of colon cancer

1 reference

12 December 2020

The genomic and transcriptomic architecture of 2,000 breast tumours reveals novel subgroups

1 reference

12 December 2020

Absolute quantification of somatic DNA alterations in human cancer

1 reference

12 December 2020

The accessible chromatin landscape of the human genome

1 reference

12 December 2020

Genome-wide mapping of nucleosome positioning and DNA methylation within individual DNA molecules

1 reference

12 December 2020

Mice lacking a Myc enhancer that includes human SNP rs6983267 are resistant to intestinal tumors.

1 reference

12 December 2020

Repurposing CRISPR as an RNA-guided platform for sequence-specific control of gene expression

1 reference

12 December 2020

A switch between topological domains underlies HoxD genes collinearity in mouse limbs

1 reference

12 December 2020

Dual roles of the transcription factor grainyhead-like 2 (GRHL2) in breast cancer

1 reference

12 December 2020

Master regulators of FGFR2 signalling and breast cancer risk

1 reference

12 December 2020

Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position

1 reference

12 December 2020

Inferring tumour purity and stromal and immune cell admixture from expression data

1 reference

12 December 2020

Refined DNase-seq protocol and data analysis reveals intrinsic bias in transcription factor footprint identification

1 reference

12 December 2020

Skewer: a fast and accurate adapter trimmer for next-generation sequencing paired-end reads

1 reference

12 December 2020

Machine learning. Clustering by fast search and find of density peaks.

1 reference

12 December 2020

Tn5 transposase and tagmentation procedures for massively scaled sequencing projects

1 reference

12 December 2020

Genome-driven integrated classification of breast cancer validated in over 7,500 samples

1 reference

12 December 2020

Determination and inference of eukaryotic transcription factor sequence specificity

1 reference

12 December 2020

ATAC-seq: A Method for Assaying Chromatin Accessibility Genome-Wide

1 reference

12 December 2020

Molecular and genetic properties of tumors associated with local immune cytolytic activity

1 reference

12 December 2020

Integrative analysis of 111 reference human epigenomes

1 reference

12 December 2020

Inferring regulatory element landscapes and transcription factor networks from cancer methylomes

1 reference

12 December 2020

CTCF/cohesin-binding sites are frequently mutated in cancer

1 reference

12 December 2020

Whole-genome fingerprint of the DNA methylome during human B cell differentiation

1 reference

12 December 2020

Epigenomic Signatures of Neuronal Diversity in the Mammalian Brain

1 reference

12 December 2020

LDlink: a web-based application for exploring population-specific haplotype structure and linking correlated alleles of possible functional variants

1 reference

12 December 2020

Integrated methylome and transcriptome analysis reveals novel regulatory elements in pediatric acute lymphoblastic leukemia

1 reference

12 December 2020

Comprehensive Molecular Portraits of Invasive Lobular Breast Cancer

1 reference

12 December 2020

Comprehensive Molecular Characterization of Papillary Renal-Cell Carcinoma

1 reference

12 December 2020

An interaction proteomics survey of transcription factor binding at recurrent TERT promoter mutations

1 reference

12 December 2020

Genefu: an R/Bioconductor package for computation of gene expression-based signatures in breast cancer.

1 reference

12 December 2020

Regulators of genetic risk of breast cancer identified by integrative network analysis

1 reference

12 December 2020

Molecular Profiling Reveals Biologically Discrete Subsets and Pathways of Progression in Diffuse Glioma

1 reference

12 December 2020

Activation of proto-oncogenes by disruption of chromosome neighborhoods.

1 reference

12 December 2020

Nfib Promotes Metastasis through a Widespread Increase in Chromatin Accessibility

1 reference

12 December 2020

Lineage-specific and single-cell chromatin accessibility charts human hematopoiesis and leukemia evolution

1 reference

12 December 2020

Systematic mapping of functional enhancer-promoter connections with CRISPR interference

1 reference

12 December 2020

BCL2 as a Subtype-Specific Prognostic Marker for Breast Cancer

1 reference

12 December 2020

Lineage-Specific Genome Architecture Links Enhancers and Non-coding Disease Variants to Target Gene Promoters

1 reference

12 December 2020

A Multiplexed Single-Cell CRISPR Screening Platform Enables Systematic Dissection of the Unfolded Protein Response

1 reference

12 December 2020

Improved regulatory element prediction based on tissue-specific local epigenomic signatures

1 reference

12 December 2020

GuideScan software for improved single and paired CRISPR guide RNA design

1 reference

12 December 2020

Impact of cytosine methylation on DNA binding specificities of human transcription factors.

1 reference

12 December 2020

Bivariate Genomic Footprinting Detects Changes in Transcription Factor Activity

1 reference

12 December 2020

The whole-genome landscape of medulloblastoma subtypes

1 reference

12 December 2020

Epigenetic plasticity and the hallmarks of cancer.

1 reference

12 December 2020

chromVAR: inferring transcription-factor-associated accessibility from single-cell epigenomic data

1 reference

12 December 2020

An improved ATAC-seq protocol reduces background and enables interrogation of frozen tissues.

1 reference

12 December 2020

Enhancer connectome in primary human cells identifies target genes of disease-associated DNA elements.

1 reference

12 December 2020

Comprehensive Molecular Characterization of Muscle-Invasive Bladder Cancer

1 reference

12 December 2020

TumorMap: Exploring the Molecular Similarities of Cancer Samples in an Interactive Portal

1 reference

12 December 2020

DNA methylation loss in late-replicating domains is linked to mitotic cell division.

1 reference

12 December 2020

The Cancer Genome Atlas: Creating Lasting Value beyond Its Data

1 reference

12 December 2020

Cell-of-Origin Patterns Dominate the Molecular Classification of 10,000 Tumors from 33 Types of Cancer.

1 reference

12 December 2020

A Pan-Cancer Analysis of Enhancer Expression in Nearly 9000 Patient Samples.

1 reference

12 December 2020

An Integrated TCGA Pan-Cancer Clinical Data Resource to Drive High-Quality Survival Outcome Analytics.

1 reference

12 December 2020

The Immune Landscape of Cancer.

1 reference

12 December 2020

Transcriptional Dysregulation of MYC Reveals Common Enhancer-Docking Mechanism.

1 reference

12 December 2020

Pluripotency factors functionally premark cell-type-restricted enhancers in ES cells

1 reference

12 December 2020

Promoter of lncRNA Gene PVT1 Is a Tumor-Suppressor DNA Boundary Element

1 reference

12 December 2020

Integrated Molecular Characterization of Testicular Germ Cell Tumors

1 reference

12 December 2020

SeSAMe: reducing artifactual detection of DNA methylation by Infinium BeadChips in genomic deletions

1 reference

12 December 2020

Identifiers

DOI

10.1126/SCIENCE.AAV1898

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30361341%20AND%20SRC:MED&resulttype=core&format=json

30 April 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30361341%20AND%20SRC:MED&resulttype=core&format=json

30 April 2020

PubMed publication ID

30361341

1 reference