(Q58789782)

3

0 references

Matthew E Ritchie

object named as

Matthew E Ritchie

9

0 references

author name string

Shian Su

2

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Daniela Amann-Zalcenstein

4

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Christine Biben

5

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Azadeh Seidi

6

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Douglas J Hilton

7

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Shalin H Naik

PLOS Computational Biology

8

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language of work or name

English

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publication date

August 2018

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published in

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volume

14

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issue

8

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page(s)

e1006361

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copyright license

Creative Commons Attribution 4.0 International

start time

10 August 2018

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

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describes a project that uses

edgeR

object named as

edgeR

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

cites work

Exploring the single-cell RNA-seq analysis landscape with the scRNA-tools database

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6105007

dropEst: pipeline for accurate estimation of molecular counts in droplet-based single-cell RNA-seq experiments.

30 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6105007

zUMIs - A fast and flexible pipeline to process RNA sequencing data with UMIs.

30 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6105007

A general and flexible method for signal extraction from single-cell RNA-seq data.

30 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6105007

SC3: consensus clustering of single-cell RNA-seq data

30 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6105007

Power analysis of single-cell RNA-sequencing experiments

30 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6105007

UMI-tools: modeling sequencing errors in Unique Molecular Identifiers to improve quantification accuracy

30 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6105007

Massively parallel digital transcriptional profiling of single cells

30 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6105007

Scater: pre-processing, quality control, normalization and visualization of single-cell RNA-seq data in R

30 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6105007

A step-by-step workflow for low-level analysis of single-cell RNA-seq data with Bioconductor.

30 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6105007

mclust 5: Clustering, Classification and Density Estimation Using Gaussian Finite Mixture Models

30 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6105007

A statistical approach for identifying differential distributions in single-cell RNA-seq experiments

30 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6105007

CEL-Seq2: sensitive highly-multiplexed single-cell RNA-Seq

30 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6105007

MAST: a flexible statistical framework for assessing transcriptional changes and characterizing heterogeneity in single-cell RNA sequencing data

30 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6105007

BASiCS: Bayesian Analysis of Single-Cell Sequencing Data

30 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6105007

Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets

30 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6105007

Orchestrating high-throughput genomic analysis with Bioconductor

30 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6105007

Single-cell RNA-seq highlights intratumoral heterogeneity in primary glioblastoma

30 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6105007

The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells

30 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6105007

featureCounts: an efficient general purpose program for assigning sequence reads to genomic features

30 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6105007

The Subread aligner: fast, accurate and scalable read mapping by seed-and-vote

30 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6105007

STAR: ultrafast universal RNA-seq aligner

30 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6105007

Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation

30 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6105007

Densely interconnected transcriptional circuits control cell states in human hematopoiesis

30 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6105007

10.1371/JOURNAL.PCBI.1006361

30 November 2018

Identifiers

DOI

0 references

DBLP publication ID

journals/ploscb/TianSDABSHNR18

1 reference