(Q31031428)

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MAST: a flexible statistical framework for assessing transcriptional changes and characterizing heterogeneity in single-cell RNA sequencing data

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scholarly article

1 reference

Europe PubMed Central

PMC publication ID

13 August 2017

MAST: a flexible statistical framework for assessing transcriptional changes and characterizing heterogeneity in single-cell RNA sequencing data (English)

1 reference

Europe PubMed Central

PMC publication ID

13 August 2017

0 references

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9

object named as

M Juliana McElrath

1 reference

Europe PubMed Central

PMC publication ID

13 August 2017

object named as

Andrew McDavid

2

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object named as

Greg Finak

1

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object named as

Martin Prlic

10

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object named as

Alex K Shalek

6

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Raphael Gottardo

12

object named as

Raphael Gottardo

1 reference

Europe PubMed Central

PMC publication ID

13 August 2017

Vivian H Gersuk

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object named as

Vivian Gersuk

1 reference

Europe PubMed Central

PMC publication ID

13 August 2017

author name string

Masanao Yajima

3

1 reference

Europe PubMed Central

PMC publication ID

13 August 2017

Jingyuan Deng

4

1 reference

Europe PubMed Central

PMC publication ID

13 August 2017

Chloe K Slichter

7

1 reference

Europe PubMed Central

PMC publication ID

13 August 2017

Hannah W Miller

8

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Europe PubMed Central

PMC publication ID

13 August 2017

Peter S Linsley

11

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Europe PubMed Central

PMC publication ID

13 August 2017

publication date

10 December 2015

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Europe PubMed Central

PMC publication ID

13 August 2017

1 reference

Europe PubMed Central

PMC publication ID

13 August 2017

16

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Europe PubMed Central

PMC publication ID

13 August 2017

278

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Europe PubMed Central

PMC publication ID

13 August 2017

describes a project that uses

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edgeR

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

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DEseq

DESeq

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

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limma

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

Single mammalian cells compensate for differences in cellular volume and DNA copy number through independent global transcriptional mechanisms.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4676162

21 June 2018

Computational analysis of cell-to-cell heterogeneity in single-cell RNA-sequencing data reveals hidden subpopulations of cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4676162

21 June 2018

svaseq: removing batch effects and other unwanted noise from sequencing data

1 reference

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21 June 2018

Normalization of RNA-seq data using factor analysis of control genes or samples

1 reference

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21 June 2018

Single-cell RNA-seq reveals dynamic paracrine control of cellular variation

1 reference

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21 June 2018

Bayesian approach to single-cell differential expression analysis

1 reference

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The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells

1 reference

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Distinct requirements for activation of NKT and NK cells during viral infection

1 reference

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21 June 2018

voom: Precision weights unlock linear model analysis tools for RNA-seq read counts

1 reference

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21 June 2018

Molecular signatures of antibody responses derived from a systems biology study of five human vaccines

1 reference

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21 June 2018

Genetic determinants and cellular constraints in noisy gene expression

1 reference

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21 June 2018

From single-cell to cell-pool transcriptomes: stochasticity in gene expression and RNA splicing.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4676162

21 June 2018

Accounting for technical noise in single-cell RNA-seq experiments.

1 reference

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21 June 2018

Bystander-activated memory CD8 T cells control early pathogen load in an innate-like, NKG2D-dependent manner

1 reference

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21 June 2018

Data exploration, quality control and testing in single-cell qPCR-based gene expression experiments.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4676162

21 June 2018

Quantitative analysis of fission yeast transcriptomes and proteomes in proliferating and quiescent cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4676162

21 June 2018

Camera: a competitive gene set test accounting for inter-gene correlation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4676162

21 June 2018

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4676162

21 June 2018

The Mouse Genome Database (MGD): premier model organism resource for mammalian genomics and genetics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4676162

21 June 2018

Differential expression analysis for sequence count data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4676162

21 June 2018

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4676162

21 June 2018

GOrilla: a tool for discovery and visualization of enriched GO terms in ranked gene lists

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4676162

21 June 2018

Imaging individual mRNA molecules using multiple singly labeled probes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4676162

21 June 2018

Stochastic gene expression: from single molecules to the proteome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4676162

21 June 2018

Linear models and empirical bayes methods for assessing differential expression in microarray experiments

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4676162

21 June 2018

Bioconductor: open software development for computational biology and bioinformatics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4676162

21 June 2018

Stochastic gene expression in a single cell

1 reference

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21 June 2018

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1 reference

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1 reference

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25 November 2018

Combining independent p values: extensions of the Stouffer and binomial methods.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4676162

25 November 2018

Interferon-gamma modulates the lipopolysaccharide-induced expression of AP-1 and NF-kappa B at the mRNA and protein level in human monocytes

1 reference

https://pubmed.ncbi.nlm.nih.gov/26653891

12 December 2020

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10.1186/S13059-015-0844-5

1 reference

Europe PubMed Central

PMC publication ID

13 August 2017

Dimensions Publication ID

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PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

13 August 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

13 August 2017

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