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Systematic perturbation of retroviral LTRs reveals widespread long-range effects on human gene regulation
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Europe PubMed Central
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15 April 2020
title
Systematic perturbation of retroviral LTRs reveals widespread long-range effects on human gene regulation
(English)
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Europe PubMed Central
PMC publication ID
6158008
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30070637%20AND%20SRC:MED&resulttype=core&format=json
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15 April 2020
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Daniel R Fuentes
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1
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Europe PubMed Central
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6158008
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30070637%20AND%20SRC:MED&resulttype=core&format=json
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15 April 2020
Tomasz Świgut
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2
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Europe PubMed Central
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6158008
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30070637%20AND%20SRC:MED&resulttype=core&format=json
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15 April 2020
Joanna Wysocka
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Europe PubMed Central
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6158008
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30070637%20AND%20SRC:MED&resulttype=core&format=json
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15 April 2020
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Daniel R Fuentes
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Tomek Swigut
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Joanna Wysocka
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3
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language of work or name
English
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publication date
2 August 2018
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Europe PubMed Central
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6158008
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30070637%20AND%20SRC:MED&resulttype=core&format=json
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15 April 2020
published in
eLife
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stated in
Europe PubMed Central
PMC publication ID
6158008
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30070637%20AND%20SRC:MED&resulttype=core&format=json
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15 April 2020
volume
7
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Europe PubMed Central
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6158008
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30070637%20AND%20SRC:MED&resulttype=core&format=json
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15 April 2020
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DESeq2
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DESeq2
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6158008
retrieved
30 November 2018
Epigenetic histone modifications of human transposable elements: genome defense versus exaptation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6158008
retrieved
30 November 2018
KAP1 controls endogenous retroviruses in embryonic stem cells
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6158008
retrieved
30 November 2018
The Sequence Alignment/Map format and SAMtools
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6158008
retrieved
30 November 2018
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6158008
retrieved
30 November 2018
Model-based analysis of ChIP-Seq (MACS)
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6158008
retrieved
30 November 2018
Evolution of the mammalian transcription factor binding repertoire via transposable elements
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6158008
retrieved
30 November 2018
Transposable elements and the evolution of regulatory networks
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6158008
retrieved
30 November 2018
Evolutionary and Biomedical Insights from the Rhesus Macaque Genome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6158008
retrieved
30 November 2018
Genomewide screening reveals high levels of insertional polymorphism in the human endogenous retrovirus family HERV-K(HML2): implications for present-day activity
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6158008
retrieved
30 November 2018
Core transcriptional regulatory circuitry in human embryonic stem cells
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6158008
retrieved
30 November 2018
The profile of repeat-associated histone lysine methylation states in the mouse epigenome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6158008
retrieved
30 November 2018
Long-term reinfection of the human genome by endogenous retroviruses
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6158008
retrieved
30 November 2018
Initial sequencing and analysis of the human genome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6158008
retrieved
30 November 2018
Many human endogenous retrovirus K (HERV-K) proviruses are unique to humans
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6158008
retrieved
30 November 2018
Human-specific integrations of the HERV-K endogenous retrovirus family
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6158008
retrieved
30 November 2018
Expression of human endogenous retrovirus K elements in germ cell and trophoblastic tumors.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6158008
retrieved
30 November 2018
Evidence that HERV-K is the endogenous retrovirus sequence that codes for the human teratocarcinoma-derived retrovirus HTDV.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6158008
retrieved
30 November 2018
A novel human nonviral retroposon derived from an endogenous retrovirus
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6158008
retrieved
30 November 2018
Identifiers
DOI
10.7554/ELIFE.35989
1 reference
stated in
Europe PubMed Central
PMC publication ID
6158008
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30070637%20AND%20SRC:MED&resulttype=core&format=json
retrieved
15 April 2020
PMC publication ID
6158008
1 reference
stated in
Europe PubMed Central
PMC publication ID
6158008
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30070637%20AND%20SRC:MED&resulttype=core&format=json
retrieved
15 April 2020
PubMed publication ID
30070637
1 reference
stated in
Europe PubMed Central
PMC publication ID
6158008
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30070637%20AND%20SRC:MED&resulttype=core&format=json
retrieved
15 April 2020
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