(Q42183567)

18 October 2017

title

Primate-specific endogenous retrovirus-driven transcription defines naive-like stem cells (English)

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18 October 2017

15

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18 October 2017

Jichang Wang

1

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Daniel Besser

Daniel Besser

8

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Nina V Fuchs

Nina V Fuchs

10

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Matthew C. Lorincz

Matthew C Lorincz

13

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Avazeh T Ghanbarian

Avazeh T Ghanbarian

4

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Alessandro Prigione

9

Alessandro Prigione

1 reference

18 October 2017

14

Zoltán Ivics

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18 October 2017

16

Zsuzsanna Izsvák

1 reference

18 October 2017

Gangcai Xie

2

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18 October 2017

Manvendra Singh

3

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18 October 2017

Tamás Raskó

5

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18 October 2017

Attila Szvetnik

6

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18 October 2017

Huiqiang Cai

7

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18 October 2017

Gerald G Schumann

11

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18 October 2017

Wei Chen

12

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18 October 2017

language of work or name

English

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publication date

15 October 2014

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18 October 2017

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18 October 2017

volume

516

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18 October 2017

issue

7531

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18 October 2017

page(s)

405-409

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Uncovering the true identity of naïve pluripotent stem cells

18 October 2017

cites work

1 reference

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Induction of a human pluripotent state with distinct regulatory circuitry that resembles preimplantation epiblast.

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Derivation of novel human ground state naive pluripotent stem cells

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Human embryonic stem cells with biological and epigenetic characteristics similar to those of mouse ESCs

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Identification of the missing pluripotency mediator downstream of leukaemia inhibitory factor.

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Transposable elements have rewired the core regulatory network of human embryonic stem cells

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The retrovirus HERVH is a long noncoding RNA required for human embryonic stem cell identity

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Deep transcriptome profiling of mammalian stem cells supports a regulatory role for retrotransposons in pluripotency maintenance

21 January 2018

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HERV-H RNA is abundant in human embryonic stem cells and a precise marker for pluripotency.

21 January 2018

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Transposable elements reveal a stem cell-specific class of long noncoding RNAs

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MYC/MAX control ERK signaling and pluripotency by regulation of dual-specificity phosphatases 2 and 7.

21 January 2018

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Epigenomic analysis of multilineage differentiation of human embryonic stem cells

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An Oct4-centered protein interaction network in embryonic stem cells

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Integration of external signaling pathways with the core transcriptional network in embryonic stem cells

21 January 2018

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Large intergenic non-coding RNA-RoR modulates reprogramming of human induced pluripotent stem cells

21 January 2018

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Human long non-coding RNAs promote pluripotency and neuronal differentiation by association with chromatin modifiers and transcription factors.

21 January 2018

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Embryonic stem cell self-renewal pathways converge on the transcription factor Tfcp2l1

21 January 2018

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Systematic repression of transcription factors reveals limited patterns of gene expression changes in ES cells

21 January 2018

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Molecular evolution of a novel hyperactive Sleeping Beauty transposase enables robust stable gene transfer in vertebrates

21 January 2018

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Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells

21 January 2018

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Single-cell RNA-Seq profiling of human preimplantation embryos and embryonic stem cells

21 January 2018

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Naive and primed pluripotent states

21 January 2018

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Eutherian mammals use diverse strategies to initiate X-chromosome inactivation during development.

21 January 2018

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Modulation of CP2 family transcriptional activity by CRTR-1 and sumoylation

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Defining an essential transcription factor program for naïve pluripotency

21 January 2018

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Sleeping Beauty transposon-based system for cellular reprogramming and targeted gene insertion in induced pluripotent stem cells.

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Generation of induced pluripotent stem cells from human cord blood.

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The senescence-related mitochondrial/oxidative stress pathway is repressed in human induced pluripotent stem cells

21 January 2018

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Induction of pluripotent stem cells from adult human fibroblasts by defined factors

21 January 2018

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Chromatin-modifying enzymes as modulators of reprogramming

21 January 2018

1 reference

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Molecular reconstruction of Sleeping Beauty, a Tc1-like transposon from fish, and its transposition in human cells

21 January 2018

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Distinct lineage specification roles for NANOG, OCT4, and SOX2 in human embryonic stem cells

21 January 2018

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Multiplex genome engineering using CRISPR/Cas systems

21 January 2018

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21 January 2018

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21 January 2018

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Fast gapped-read alignment with Bowtie 2

21 January 2018

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Model-based analysis of ChIP-Seq (MACS)

21 January 2018

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featureCounts: an efficient general purpose program for assigning sequence reads to genomic features

21 January 2018

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Discovery and characterization of chromatin states for systematic annotation of the human genome

21 January 2018

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21 January 2018

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Detection of functional DNA motifs via statistical over-representation

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE13804

Computational inference of transcriptional regulatory networks from expression profiling and transcription factor binding site identification

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE13804

An expansive human regulatory lexicon encoded in transcription factor footprints

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE13804

BEDTools: a flexible suite of utilities for comparing genomic features

21 January 2018

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LNCipedia: a database for annotated human lncRNA transcript sequences and structures

21 January 2018

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CPC: assess the protein-coding potential of transcripts using sequence features and support vector machine.

21 January 2018

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Waves of early transcriptional activation and pluripotency program initiation during human preimplantation development

21 January 2018

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Metastable pluripotent states in NOD-mouse-derived ESCs

21 January 2018

1 reference

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Predicting protein associations with long noncoding RNAs

21 January 2018

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Induction of human fetal globin gene expression by a novel erythroid factor, NF-E4

21 January 2018

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A census of human soluble protein complexes

21 January 2018

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Systematic identification of culture conditions for induction and maintenance of naive human pluripotency

21 January 2018

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12 December 2020

Chd1 regulates open chromatin and pluripotency of embryonic stem cells

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12 December 2020

Embryonic stem cell potency fluctuates with endogenous retrovirus activity

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12 December 2020

Frog Prince transposon-based RNAi vectors mediate efficient gene knockdown in human cells

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12 December 2020

Identifiers

DOI

10.1038/NATURE13804

1 reference

18 October 2017

1 reference