(Q59050242)

A curated database reveals trends in single-cell transcriptomics

https://www.nxn.se/single-cell-studies/data.tsv

7 February 2021

14

Bonnie Berger

0 references

Alex K. Shalek

18

object named as

Alex K Shalek

0 references

Samuel W Kazer

9

object named as

Samuel W Kazer

0 references

Jose Ordovas-Montanes

1

object named as

Jose Ordovas-Montanes

0 references

author name string

Daniel F Dwyer

2

0 references

Sarah K Nyquist

3

0 references

Kathleen M Buchheit

4

0 references

Marko Vukovic

5

0 references

Chaarushena Deb

6

0 references

Marc H Wadsworth

7

0 references

Travis K Hughes

8

0 references

Eri Yoshimoto

10

0 references

Katherine N Cahill

11

0 references

Neil Bhattacharyya

12

0 references

Howard R Katz

13

0 references

Tanya M Laidlaw

15

0 references

Joshua A Boyce

16

0 references

Nora A Barrett

17

0 references

language of work or name

English

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publication date

August 2018

0 references

number of pages

6

1 reference

describes a project that uses

inferred from page(s)

published in

Nature

0 references

volume

560

0 references

issue

7720

0 references

page(s)

649-654

0 references

respiratory tract

1 reference

A curated database reveals trends in single-cell transcriptomics

7 February 2021

https://www.nxn.se/single-cell-studies/data.tsv

seq-well

1 reference

A curated database reveals trends in single-cell transcriptomics

https://www.nxn.se/single-cell-studies/data.tsv

7 February 2021

ImageJ

1 reference

Europe PubMed Central

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC6133715/fullTextXML

inferred from PubMed Central ID database lookup

RStudio

1 reference

Europe PubMed Central

18 June 2022

https://europepmc.org/article/PMC/6133715

inferred from PubMed Central ID database lookup

exact match

https://scigraph.springernature.com/pub.10.1038/s41586-018-0449-8

0 references

cites work

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Inflammatory memory sensitizes skin epithelial stem cells to tissue damage.

30 November 2018

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The immunology of the allergy epidemic and the hygiene hypothesis

30 November 2018

1 reference

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Type 2 immunity in tissue repair and fibrosis

30 November 2018

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An improved ATAC-seq protocol reduces background and enables interrogation of frozen tissues.

30 November 2018

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A phenotypically and functionally distinct human TH2 cell subpopulation is associated with allergic disorders.

30 November 2018

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Etiology of epithelial barrier dysfunction in patients with type 2 inflammatory diseases.

30 November 2018

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Wnt/β-Catenin Signaling, Disease, and Emerging Therapeutic Modalities

30 November 2018

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An environment-dependent transcriptional network specifies human microglia identity

30 November 2018

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Group 2 innate lymphoid cells are elevated and activated in chronic rhinosinusitis with nasal polyps.

30 November 2018

1 reference

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Seq-Well: portable, low-cost RNA sequencing of single cells at high throughput

30 November 2018

1 reference

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Mucosal Type 2 Innate Lymphoid Cells Are a Key Component of the Allergic Response to Aeroallergens.

30 November 2018

1 reference

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Wnt Signaling in Chronic Rhinosinusitis with Nasal Polyps

30 November 2018

1 reference

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Immunopathogenesis of Chronic Rhinosinusitis and Nasal Polyposis

30 November 2018

1 reference

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Early local immune defences in the respiratory tract

30 November 2018

1 reference

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Increase of poorly proliferated p63+ /Ki67+ basal cells forming multiple layers in the aberrant remodeled epithelium in nasal polyps

30 November 2018

1 reference

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Diffusion pseudotime robustly reconstructs lineage branching

30 November 2018

1 reference

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The human olfactory transcriptome

30 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6133715

Transcriptome Analysis Reveals Distinct Gene Expression Profiles in Eosinophilic and Noneosinophilic Chronic Rhinosinusitis with Nasal Polyps

30 November 2018

1 reference

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Expression profiling of constitutive mast cells reveals a unique identity within the immune system

30 November 2018

1 reference

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Trained immunity: A program of innate immune memory in health and disease.

30 November 2018

1 reference

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High-fat diet enhances stemness and tumorigenicity of intestinal progenitors

30 November 2018

1 reference

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Effect of Subcutaneous Dupilumab on Nasal Polyp Burden in Patients With Chronic Sinusitis and Nasal Polyposis: A Randomized Clinical Trial

30 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6133715

Reparative inflammation takes charge of tissue regeneration

30 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6133715

Tuft-cell-derived IL-25 regulates an intestinal ILC2-epithelial response circuit

30 November 2018

1 reference

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Interleukin-22 promotes intestinal-stem-cell-mediated epithelial regeneration

30 November 2018

1 reference

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Single-cell chromatin accessibility reveals principles of regulatory variation

30 November 2018

1 reference

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Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets

30 November 2018

1 reference

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Spatial reconstruction of single-cell gene expression data

30 November 2018

1 reference

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Control of adaptive immunity by the innate immune system

30 November 2018

1 reference

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Respiratory epithelial cells orchestrate pulmonary innate immunity

30 November 2018

1 reference

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Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

30 November 2018

1 reference

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Allergic inflammation--innately homeostatic

30 November 2018

1 reference

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Neurotrophic tyrosine kinase receptor 1 is a direct transcriptional and epigenetic target of IL-13 involved in allergic inflammation.

30 November 2018

1 reference

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The role of airway epithelial cells and innate immune cells in chronic respiratory disease

30 November 2018

1 reference

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Repair and regeneration of the respiratory system: complexity, plasticity, and mechanisms of lung stem cell function

30 November 2018

1 reference

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Preparation of Single-Cell RNA-Seq Libraries for Next Generation Sequencing

30 November 2018

1 reference

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Genetic risk factors for the development of allergic disease identified by genome-wide association

30 November 2018

1 reference

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Dupilumab in persistent asthma with elevated eosinophil levels

30 November 2018

1 reference

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Latent enhancers activated by stimulation in differentiated cells

30 November 2018

1 reference

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Data exploration, quality control and testing in single-cell qPCR-based gene expression experiments.

30 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6133715

STAR: ultrafast universal RNA-seq aligner

30 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6133715

30 November 2018

Allergic host defences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6133715

Distinct epithelial gene expression phenotypes in childhood respiratory allergy.

30 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6133715

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

30 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6133715

The human airway epithelial basal cell transcriptome

30 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6133715

Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities

30 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6133715

Basal cells as stem cells of the mouse trachea and human airway epithelium

30 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6133715

Thymic stromal lymphopoietin is released by human epithelial cells in response to microbes, trauma, or inflammation and potently activates mast cells

30 November 2018

1 reference

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Well-differentiated human airway epithelial cell cultures.

30 November 2018

1 reference

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Human rhinovirus infection induces airway epithelial cell production of human beta-defensin 2 both in vitro and in vivo

30 November 2018

1 reference

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T-Cell Function and Migration — Two Sides of the Same Coin

30 November 2018

1 reference

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Methods for obtaining specimens from the nasal mucosa for morphological and biochemical analysis.

30 November 2018

1 reference

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Ontogeny and Biology of Human Small Airway Epithelial Club Cells

30 November 2018

1 reference

https://api.crossref.org/works/10.1038%2FS41586-018-0449-8

7 January 2021

Rhinosinusitis: establishing definitions for clinical research and patient care

1 reference

https://api.crossref.org/works/10.1038%2FS41586-018-0449-8

7 January 2021

Dupilumab treatment in adults with moderate-to-severe atopic dermatitis

1 reference

https://api.crossref.org/works/10.1038%2FS41586-018-0449-8

7 January 2021

Integrating single-cell transcriptomic data across different conditions, technologies, and species

1 reference

https://api.crossref.org/works/10.1038%2FS41586-018-0449-8

7 January 2021

Declining biodiversity can alter the performance of ecosystems

1 reference

https://api.crossref.org/works/10.1038%2FS41586-018-0449-8

7 January 2021

Measurement of Diversity

1 reference

https://api.crossref.org/works/10.1038%2FS41586-018-0449-8

7 January 2021