(Q59278286)

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Mean-field interactions between nucleic-acid-base dipoles can drive the formation of a double helix

scientific article published in Physical Review Letters

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Mean-field interactions between nucleic-acid-base dipoles can drive the formation of a double helix (English)

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Harold A. Scheraga

4

object named as

Harold A Scheraga

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5

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Adam Liwo

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Stanislaw Oldziej

3

object named as

Stanisław Ołdziej

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Maciej Maciejczyk

2

object named as

Maciej Maciejczyk

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author name string

Yi He

1

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publication date

1 March 2013

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Physical Review Letters

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110

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9

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098101

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DNA nanomachines

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https://pubmed.ncbi.nlm.nih.gov/23496746

12 December 2020

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Statistical mechanics of a nonlinear model for DNA denaturation

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https://pubmed.ncbi.nlm.nih.gov/23496746

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Coarse-grained force field for the nucleosome from self-consistent multiscaling

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Application of Multiplexed Replica Exchange Molecular Dynamics to the UNRES Force Field: Tests with alpha and alpha+beta Proteins

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https://pubmed.ncbi.nlm.nih.gov/23496746

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Molecular Structure of Nucleic Acids: A Structure for Deoxyribose Nucleic Acid

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https://pubmed.ncbi.nlm.nih.gov/23496746

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Coarse-grained model of nucleic acid bases.

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https://pubmed.ncbi.nlm.nih.gov/23496746

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Simulating DNA at low resolution

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https://pubmed.ncbi.nlm.nih.gov/23496746

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Bubble nucleation and cooperativity in DNA melting

1 reference

https://pubmed.ncbi.nlm.nih.gov/23496746

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Implementation of molecular dynamics and its extensions with the coarse-grained UNRES force field on massively parallel systems; towards millisecond-scale simulations of protein structure, dynamics, and thermodynamics.

1 reference

https://pubmed.ncbi.nlm.nih.gov/23496746

12 December 2020

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Prediction of protein conformation on the basis of a search for compact structures: test on avian pancreatic polypeptide

1 reference

https://pubmed.ncbi.nlm.nih.gov/23496746

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Ab initio simulations of protein-folding pathways by molecular dynamics with the united-residue model of polypeptide chains

1 reference

https://pubmed.ncbi.nlm.nih.gov/23496746

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Guanine radical chemistry reveals the effect of thermal fluctuations in gene promoter regions

1 reference

https://pubmed.ncbi.nlm.nih.gov/23496746

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Base-pair opening and closing reactions in the double helix. A stopped-flow hydrogen exchange study in poly(rA).poly(rU).

1 reference

https://pubmed.ncbi.nlm.nih.gov/23496746

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Mechanical unfolding of RNA hairpins

1 reference

https://pubmed.ncbi.nlm.nih.gov/23496746

12 December 2020

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Simulations of nucleic acids and their complexes

1 reference

https://pubmed.ncbi.nlm.nih.gov/23496746

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DNA nanotweezers studied with a coarse-grained model of DNA.

1 reference

https://pubmed.ncbi.nlm.nih.gov/23496746

12 December 2020

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UNAFold: software for nucleic acid folding and hybridization

1 reference

https://pubmed.ncbi.nlm.nih.gov/23496746

12 December 2020

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The thermodynamics of DNA structural motifs

1 reference

https://pubmed.ncbi.nlm.nih.gov/23496746

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Occurrence of a phase transition in nucleic acid models

1 reference

https://pubmed.ncbi.nlm.nih.gov/23496746

12 December 2020

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Bubble Dynamics in Double-Stranded DNA

1 reference

https://pubmed.ncbi.nlm.nih.gov/23496746

12 December 2020

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A coarse grain model for DNA.

1 reference

https://pubmed.ncbi.nlm.nih.gov/23496746

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Modification and optimization of the united-residue (UNRES) potential energy function for canonical simulations. I. Temperature dependence of the effective energy function and tests of the optimization method with single training proteins.

1 reference

https://pubmed.ncbi.nlm.nih.gov/23496746

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Mfold web server for nucleic acid folding and hybridization prediction

1 reference

https://pubmed.ncbi.nlm.nih.gov/23496746

12 December 2020

based on heuristic

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Identifiers

10.1103/PHYSREVLETT.110.098101

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