(Q62675655)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30060190%20AND%20SRC:MED&resulttype=core&format=json

15 April 2020

title

Pattern of DNA Methylation in Daphnia: Evolutionary Perspective (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30060190%20AND%20SRC:MED&resulttype=core&format=json

15 April 2020

author name string

Jouni Kvist

1

1 reference

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15 April 2020

Camila Gonçalves Athanàsio

2

1 reference

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15 April 2020

Omid Shams Solari

3

1 reference

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15 April 2020

James B Brown

4

1 reference

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15 April 2020

Leda Mirbahai

7

1 reference

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15 April 2020

language of work or name

English

0 references

publication date

1 August 2018

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30060190%20AND%20SRC:MED&resulttype=core&format=json

Genome Biology and Evolution

15 April 2020

published in

1 reference

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15 April 2020

volume

10

1 reference

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15 April 2020

issue

8

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15 April 2020

page(s)

1988-2007

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Creative Commons Attribution 4.0 International

15 April 2020

copyright license

start time

30 July 2018

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

describes a project that uses

DESeq2

object named as

DESeq2

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

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Effect of 5-azacytidine on differentiation and DNA methylation in human promyelocytic leukemia cells (HL-60)

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The systematics of North American Daphnia (Crustacea: Anomopoda): a molecular phylogenetic approach.

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The role of DNA methylation in mammalian epigenetics

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5-Azacytidine and 5-aza-2'-deoxycytidine as inhibitors of DNA methylation: mechanistic studies and their implications for cancer therapy

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MUSCLE: a multiple sequence alignment method with reduced time and space complexity

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Expression of target and reference genes in Daphnia magna exposed to ibuprofen

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Different levels of alternative splicing among eukaryotes

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Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments

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12 December 2020

Occurrence of DNA methylation in Daphnia magna and influence of multigeneration Cd exposure

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12 December 2020

Nucleotide polymorphism and within-gene recombination in Daphnia magna and D. pulex, two cyclical parthenogens

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12 December 2020

Targeted and genome-scale strategies reveal gene-body methylation signatures in human cells

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12 December 2020

Fast and accurate short read alignment with Burrows-Wheeler transform

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12 December 2020

Quantitative DNA-methylation in Daphnia magna and effects of multigeneration Zn exposure.

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12 December 2020

Dynamic DNA methylation programs persistent adverse effects of early-life stress

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12 December 2020

Direct and transgenerational impact on Daphnia magna of chemicals with a known effect on DNA methylation

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TreeGraph 2: Combining and visualizing evidence from different phylogenetic analyses

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Genome-wide evolutionary analysis of eukaryotic DNA methylation.

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Conservation and divergence of methylation patterning in plants and animals

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Single base-resolution methylome of the silkworm reveals a sparse epigenomic map.

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Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

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Abundant quantitative trait loci exist for DNA methylation and gene expression in human brain

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12 December 2020

New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0

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12 December 2020

Gene transcription profiles, global DNA methylation and potential transgenerational epigenetic effects related to Zn exposure history in Daphnia magna

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12 December 2020

The Honey Bee Epigenomes: Differential Methylation of Brain DNA in Queens and Workers

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12 December 2020

SLIM: a sliding linear model for estimating the proportion of true null hypotheses in datasets with dependence structures.

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12 December 2020

DNA methylation patterns associate with genetic and gene expression variation in HapMap cell lines

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12 December 2020

DNA methylation of the first exon is tightly linked to transcriptional silencing

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12 December 2020

The ecoresponsive genome of Daphnia pulex

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12 December 2020

A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data

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12 December 2020

Diet restriction and life history trade-offs in short- and long-lived species of Daphnia

1 reference

12 December 2020

Changes in exon-intron structure during vertebrate evolution affect the splicing pattern of exons

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12 December 2020

Genomic analyses of aminergic signaling systems (dopamine, octopamine and serotonin) in Daphnia pulex

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12 December 2020

Is There a Relationship between DNA Methylation and Phenotypic Plasticity in Invertebrates?

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12 December 2020

The evolution of invertebrate gene body methylation

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12 December 2020

clusterProfiler: an R package for comparing biological themes among gene clusters.

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12 December 2020

Daphnia as an emerging epigenetic model organism

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12 December 2020

Widespread dynamic DNA methylation in response to biotic stress

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12 December 2020

Genome-wide and caste-specific DNA methylomes of the ants Camponotus floridanus and Harpegnathos saltator

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12 December 2020

An integrated encyclopedia of DNA elements in the human genome

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12 December 2020

methylKit: a comprehensive R package for the analysis of genome-wide DNA methylation profiles

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12 December 2020

Aging in sexual and obligately asexual clones of Daphnia from temporary ponds

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12 December 2020

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

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12 December 2020

Charting a dynamic DNA methylation landscape of the human genome

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12 December 2020

Function and evolution of DNA methylation in Nasonia vitripennis

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12 December 2020

Early-life stress reduces DNA methylation of the Pomc gene in male mice.

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12 December 2020

DNA methylation in mammals

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12 December 2020

Reduced lifespan and increased ageing driven by genetic drift in small populations.

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12 December 2020

DNA copy number analysis of fresh and formalin-fixed specimens by shallow whole-genome sequencing with identification and exclusion of problematic regions in the genome assembly

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12 December 2020

HTSeq--a Python framework to work with high-throughput sequencing data

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12 December 2020

Functional genomics of acclimation and adaptation in response to thermal stress in Daphnia

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12 December 2020

Conserved and divergent patterns of DNA methylation in higher vertebrates

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12 December 2020

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

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12 December 2020

Methyl farnesoate synthesis is necessary for the environmental sex determination in the water flea Daphnia pulex.

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12 December 2020

Genome-wide comparative analysis reveals human-mouse regulatory landscape and evolution

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12 December 2020

The alternative role of DNA methylation in splicing regulation

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12 December 2020

Telomerase activity and telomere length in Daphnia

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12 December 2020

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12 December 2020

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12 December 2020

Dopamine is a key regulator in the signalling pathway underlying predator-induced defences in Daphnia.

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12 December 2020

High mutational rates of large-scale duplication and deletion in Daphnia pulex.

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12 December 2020

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12 December 2020

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12 December 2020

Evolutionary Transition of Promoter and Gene Body DNA Methylation across Invertebrate-Vertebrate Boundary

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12 December 2020

Gene Body Methylation Patterns in Daphnia Are Associated with Gene Family Size.

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12 December 2020

Daphnia magna transcriptome by RNA-Seq across 12 environmental stressors

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12 December 2020

Optimisation of DNA extraction from the crustacean Daphnia

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12 December 2020

Whole genome DNA methylation: beyond genes silencing

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12 December 2020

Bisulfite Sequencing with Daphnia Highlights a Role for Epigenetics in Regulating Stress Response to Microcystis through Preferential Differential Methylation of Serine and Threonine Amino Acids.

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12 December 2020

Evolution of DNA Methylation across Insects

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12 December 2020

A New Reference Genome Assembly for the Microcrustacean Daphnia pulex.

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12 December 2020

Genome-wide analysis reveals that exon methylation facilitates its selective usage in the human transcriptome

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12 December 2020

Variation in DNA Methylation Is Not Consistently Reflected by Sociality in Hymenoptera.

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12 December 2020

The association between DNA methylation and exon expression in the Pacific oyster Crassostrea gigas.

1 reference

12 December 2020

Identifiers

DOI

10.1093/GBE/EVY155

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30060190%20AND%20SRC:MED&resulttype=core&format=json

15 April 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30060190%20AND%20SRC:MED&resulttype=core&format=json

15 April 2020

PubMed publication ID

30060190

1 reference