(Q73599034)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12837388%20AND%20SRC:MED&resulttype=core&format=json

5 November 2019

title

The Mg2+ binding sites of the 5S rRNA loop E motif as investigated by molecular dynamics simulations (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12837388%20AND%20SRC:MED&resulttype=core&format=json

5 November 2019

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12837388%20AND%20SRC:MED&resulttype=core&format=json

5 November 2019

author name string

Lukasz Bielecki

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12837388%20AND%20SRC:MED&resulttype=core&format=json

5 November 2019

Eric Westhof

series ordinal

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12837388%20AND%20SRC:MED&resulttype=core&format=json

5 November 2019

publication date

1 June 2003

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12837388%20AND%20SRC:MED&resulttype=core&format=json

5 November 2019

published in

Chemistry and Biology

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12837388%20AND%20SRC:MED&resulttype=core&format=json

5 November 2019

volume

10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12837388%20AND%20SRC:MED&resulttype=core&format=json

5 November 2019

issue

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12837388%20AND%20SRC:MED&resulttype=core&format=json

5 November 2019

page(s)

551-561

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12837388%20AND%20SRC:MED&resulttype=core&format=json

describes a project that uses

5 November 2019

molecular dynamics simulation

1 reference

The linkage between magnesium binding and RNA folding.

inferred from title

cites work

1 reference

https://api.crossref.org/works/10.1016%2FS1074-5521%2803%2900121-2

7 January 2021

Mg2+-induced tRNA folding

1 reference

https://api.crossref.org/works/10.1016%2FS1074-5521%2803%2900121-2

7 January 2021

On the role of magnesium ions in RNA stability

1 reference

https://api.crossref.org/works/10.1016%2FS1074-5521%2803%2900121-2

7 January 2021

The role of metal ions in RNA catalysis

1 reference

https://api.crossref.org/works/10.1016%2FS1074-5521%2803%2900121-2

7 January 2021

Structural basis of the enhanced stability of a mutant ribozyme domain and a detailed view of RNA--solvent interactions

1 reference

https://api.crossref.org/works/10.1016%2FS1074-5521%2803%2900121-2

7 January 2021

The crystal structure of yeast phenylalanine tRNA at 2.0 A resolution: cleavage by Mg(2+) in 15-year old crystals

1 reference

https://api.crossref.org/works/10.1016%2FS1074-5521%2803%2900121-2

7 January 2021

DNA-cation interactions: quo vadis?

1 reference

https://api.crossref.org/works/10.1016%2FS1074-5521%2803%2900121-2

7 January 2021

The 5S rRNA loop E: chemical probing and phylogenetic data versus crystal structure

1 reference

https://api.crossref.org/works/10.1016%2FS1074-5521%2803%2900121-2

7 January 2021

The NMR structure of the 5S rRNA E-domain–protein L25 complex shows preformed and induced recognition

1 reference

https://api.crossref.org/works/10.1016%2FS1074-5521%2803%2900121-2

7 January 2021

Structure of Escherichia coli ribosomal protein L25 complexed with a 5S rRNA fragment at 1.8-A resolution

1 reference

https://api.crossref.org/works/10.1016%2FS1074-5521%2803%2900121-2

7 January 2021

Structure of ribosomal protein TL5 complexed with RNA provides new insights into the CTC family of stress proteins

1 reference

https://api.crossref.org/works/10.1016%2FS1074-5521%2803%2900121-2

7 January 2021

Metals, motifs, and recognition in the crystal structure of a 5S rRNA domain

1 reference

https://api.crossref.org/works/10.1016%2FS1074-5521%2803%2900121-2

7 January 2021

The loop E-loop D region of Escherichia coli 5S rRNA: the solution structure reveals an unusual loop that may be important for binding ribosomal proteins

1 reference

https://api.crossref.org/works/10.1016%2FS1074-5521%2803%2900121-2

7 January 2021

Comparison of the crystal and solution structures of two RNA oligonucleotides

1 reference

https://api.crossref.org/works/10.1016%2FS1074-5521%2803%2900121-2

7 January 2021

Effect of magnesium ion on the structure of the 5S RNA from Escherichia coli. An imino proton magnetic resonance study of the helix I, IV, and V regions of the molecule

1 reference

https://api.crossref.org/works/10.1016%2FS1074-5521%2803%2900121-2

7 January 2021

Higher order structure of chloroplastic 5S ribosomal RNA from spinach

1 reference

https://api.crossref.org/works/10.1016%2FS1074-5521%2803%2900121-2

7 January 2021

Effects of magnesium ions on the stabilization of RNA oligomers of defined structures

1 reference

https://api.crossref.org/works/10.1016%2FS1074-5521%2803%2900121-2

7 January 2021

Water and ion binding around RNA and DNA (C,G) oligomers

1 reference

https://api.crossref.org/works/10.1016%2FS1074-5521%2803%2900121-2

7 January 2021

Water and ion binding around r(UpA)12 and d(TpA)12 oligomers--comparison with RNA and DNA (CpG)12 duplexes.

1 reference

https://api.crossref.org/works/10.1016%2FS1074-5521%2803%2900121-2

7 January 2021

Sodium and chlorine ions as part of the DNA solvation shell

1 reference

https://api.crossref.org/works/10.1016%2FS1074-5521%2803%2900121-2

7 January 2021

On the competition between water, sodium ions, and spermine in binding to DNA: a molecular dynamics computer simulation study

1 reference

https://api.crossref.org/works/10.1016%2FS1074-5521%2803%2900121-2

7 January 2021

Insight into the stabilization of A-DNA by specific ion association: spontaneous B-DNA to A-DNA transitions observed in molecular dynamics simulations of d[ACCCGCGGGT]2 in the presence of hexaamminecobalt(III).

1 reference

https://api.crossref.org/works/10.1016%2FS1074-5521%2803%2900121-2

7 January 2021

Molecular dynamics simulations of an oligonucleotide duplex with adenine tracts phased by a full helix turn.

1 reference

https://api.crossref.org/works/10.1016%2FS1074-5521%2803%2900121-2

7 January 2021

Evidence for a hydroxide ion bridging two magnesium ions at the active site of the hammerhead ribozyme

1 reference

https://api.crossref.org/works/10.1016%2FS1074-5521%2803%2900121-2

7 January 2021

Molecular dynamics investigations of hammerhead ribozyme RNA

1 reference

https://api.crossref.org/works/10.1016%2FS1074-5521%2803%2900121-2

7 January 2021

Molecular dynamics simulations of the d(CCAACGTTGG)(2) decamer: influence of the crystal environment.

1 reference

https://api.crossref.org/works/10.1016%2FS1074-5521%2803%2900121-2

7 January 2021

Molecular dynamics studies of axis bending in d(G5-(GA4T4C)2-C5) and d(G5-(GT4A4C)2-C5): effects of sequence polarity on DNA curvature

1 reference

https://api.crossref.org/works/10.1016%2FS1074-5521%2803%2900121-2

7 January 2021

Molecular dynamics study displays near in-line attack conformations in the hammerhead ribozyme self-cleavage reaction

1 reference

https://api.crossref.org/works/10.1016%2FS1074-5521%2803%2900121-2

7 January 2021

Binuclear Metallohydrolases

1 reference

https://api.crossref.org/works/10.1016%2FS1074-5521%2803%2900121-2

7 January 2021

The nucleic acid database. A comprehensive relational database of three-dimensional structures of nucleic acids

1 reference

https://api.crossref.org/works/10.1016%2FS1074-5521%2803%2900121-2

7 January 2021

Crystal structure of an RNA duplex r(gugucgcac)(2) with uridine bulges

1 reference

https://api.crossref.org/works/10.1016%2FS1074-5521%2803%2900121-2

7 January 2021

1 A crystal structures of B-DNA reveal sequence-specific binding and groove-specific bending of DNA by magnesium and calcium

1 reference

https://api.crossref.org/works/10.1016%2FS1074-5521%2803%2900121-2

7 January 2021

Hexahydrated magnesium ions bind in the deep major groove and at the outer mouth of A-form nucleic acid duplexes

1 reference

https://api.crossref.org/works/10.1016%2FS1074-5521%2803%2900121-2

7 January 2021

Locating monovalent cations in the grooves of B-DNA

1 reference

https://api.crossref.org/works/10.1016%2FS1074-5521%2803%2900121-2

7 January 2021

Crystal structure of the ribonucleoprotein core of the signal recognition particle

1 reference

https://api.crossref.org/works/10.1016%2FS1074-5521%2803%2900121-2

7 January 2021

Problems in simulating macromolecular movements

1 reference

https://api.crossref.org/works/10.1016%2FS1074-5521%2803%2900121-2

7 January 2021

Interactions of Hydrated Mg2+Cation with Bases, Base Pairs, and Nucleotides. Electron Topology, Natural Bond Orbital, Electrostatic, and Vibrational Study

1 reference

https://api.crossref.org/works/10.1016%2FS1074-5521%2803%2900121-2

7 January 2021

The missing term in effective pair potentials

1 reference

https://api.crossref.org/works/10.1016%2FS1074-5521%2803%2900121-2

7 January 2021

A Second Generation Force Field for the Simulation of Proteins, Nucleic Acids, and Organic Molecules

1 reference

https://api.crossref.org/works/10.1016%2FS1074-5521%2803%2900121-2

7 January 2021

New tricks for modelers from the crystallography toolkit: the particle mesh Ewald algorithm and its use in nucleic acid simulations

1 reference

https://api.crossref.org/works/10.1016%2FS1074-5521%2803%2900121-2

7 January 2021

Hydration of the DNA bases is local

1 reference

https://api.crossref.org/works/10.1016%2FS1074-5521%2803%2900121-2

7 January 2021

Hydration of RNA base pairs

1 reference

https://api.crossref.org/works/10.1016%2FS1074-5521%2803%2900121-2

7 January 2021

Improved methods for building protein models in electron density maps and the location of errors in these models

1 reference

https://api.crossref.org/works/10.1016%2FS1074-5521%2803%2900121-2

7 January 2021

Conserved geometrical base-pairing patterns in RNA.

1 reference

https://api.crossref.org/works/10.1016%2FS1074-5521%2803%2900121-2

7 January 2021

10.1016/S1074-5521(03)00121-2

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12837388%20AND%20SRC:MED&resulttype=core&format=json

5 November 2019

1 reference