(Q84463956)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21712416%20AND%20SRC:MED&resulttype=core&format=json

6 February 2020

title

Subunit stoichiometry, evolution, and functional implications of an asymmetric plant plastid ClpP/R protease complex in Arabidopsis (English)

1 reference

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6 February 2020

author name string

Paul Dominic B Olinares

1

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6 February 2020

Jitae Kim

2

1 reference

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6 February 2020

Jerrold I Davis

3

1 reference

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6 February 2020

Klaas J van Wijk

4

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6 February 2020

publication date

28 June 2011

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6 February 2020

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6 February 2020

volume

23

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6 February 2020

issue

6

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6 February 2020

page(s)

2348-2361

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RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

6 February 2020

cites work

1 reference

12 December 2020

Jalview Version 2--a multiple sequence alignment editor and analysis workbench

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12 December 2020

Clp protease complexes from photosynthetic and non-photosynthetic plastids and mitochondria of plants, their predicted three-dimensional structures, and functional implications.

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12 December 2020

Deamidation of -Asn-Gly- sequences during sample preparation for proteomics: Consequences for MALDI and HPLC-MALDI analysis

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12 December 2020

A nuclear-encoded ClpP subunit of the chloroplast ATP-dependent Clp protease is essential for early development in Arabidopsis thaliana.

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12 December 2020

T-Coffee: A novel method for fast and accurate multiple sequence alignment

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12 December 2020

New insights into the types and function of proteases in plastids.

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12 December 2020

The chloroplast ClpP complex in Chlamydomonas reinhardtii contains an unusual high molecular mass subunit with a large apical domain.

1 reference

12 December 2020

Isotope dilution strategies for absolute quantitative proteomics

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12 December 2020

Assembly of the chloroplast ATP-dependent Clp protease in Arabidopsis is regulated by the ClpT accessory proteins

1 reference

12 December 2020

The role of mass spectrometry in structure elucidation of dynamic protein complexes

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12 December 2020

The structure of ClpP at 2.3 A resolution suggests a model for ATP-dependent proteolysis

1 reference

12 December 2020

Mass Spectrometric Sequencing of Proteins from Silver-Stained Polyacrylamide Gels

1 reference

12 December 2020

Agrobacterium-mediated transformation of Arabidopsis thaliana using the floral dip method

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12 December 2020

Plant mitochondria contain proteolytic and regulatory subunits of the ATP-dependent Clp protease

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12 December 2020

Controlled destruction: AAA+ ATPases in protein degradation from bacteria to eukaryotes

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12 December 2020

ClpP: a distinctive family of cylindrical energy-dependent serine proteases

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12 December 2020

Optimal efficiency of ClpAP and ClpXP chaperone-proteases is achieved by architectural symmetry.

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12 December 2020

Multiplexed absolute quantification in proteomics using artificial QCAT proteins of concatenated signature peptides

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12 December 2020

An alternative tandem affinity purification strategy applied to Arabidopsis protein complex isolation

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12 December 2020

PhosPhAt: the Arabidopsis thaliana phosphorylation site database. An update

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12 December 2020

Comparative evaluation of current peptide production platforms used in absolute quantification in proteomics

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12 December 2020

Scoring proteomes with proteotypic peptide probes

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12 December 2020

A Synthetic Protein Approach toward Accurate Mass Spectrometric Quantification of Component Stoichiometry of Multiprotein Complexes

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12 December 2020

Prediction of high-responding peptides for targeted protein assays by mass spectrometry

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12 December 2020

Among-site rate variation and its impact on phylogenetic analyses

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12 December 2020

The Strep-tag system for one-step purification and high-affinity detection or capturing of proteins

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12 December 2020

Gateway-compatible vectors for plant functional genomics and proteomics

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12 December 2020

Distinctive types of ATP-dependent Clp proteases in cyanobacteria

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12 December 2020

Structural and functional insights into the chloroplast ATP-dependent Clp protease in Arabidopsis

1 reference

12 December 2020

PPDB, the Plant Proteomics Database at Cornell

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12 December 2020

Structure of 20S proteasome from yeast at 2.4 A resolution

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12 December 2020

Molecular properties of ClpAP protease of Escherichia coli: ATP-dependent association of ClpA and clpP.

1 reference

12 December 2020

Profiling of protein interaction networks of protein complexes using affinity purification and quantitative mass spectrometry

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12 December 2020

Native mass spectrometry: a bridge between interactomics and structural biology

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12 December 2020

Workflow for large scale detection and validation of peptide modifications by RPLC-LTQ-Orbitrap: application to the Arabidopsis thaliana leaf proteome and an online modified peptide library

1 reference

12 December 2020

Large scale comparative proteomics of a chloroplast Clp protease mutant reveals folding stress, altered protein homeostasis, and feedback regulation of metabolism.

1 reference

12 December 2020

MASIC: a software program for fast quantitation and flexible visualization of chromatographic profiles from detected LC-MS(/MS) features

1 reference

12 December 2020

Subunits of the plastid ClpPR protease complex have differential contributions to embryogenesis, plastid biogenesis, and plant development in Arabidopsis.

1 reference

12 December 2020

The Clp protease system; a central component of the chloroplast protease network

1 reference

12 December 2020

ATP-dependent proteases of bacteria: recognition logic and operating principles

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12 December 2020

The ClpP double ring tetradecameric protease exhibits plastic ring-ring interactions, and the N termini of its subunits form flexible loops that are essential for ClpXP and ClpAP complex formation

1 reference

12 December 2020

Downregulation of ClpR2 leads to reduced accumulation of the ClpPRS protease complex and defects in chloroplast biogenesis in Arabidopsis.

1 reference

12 December 2020

Multiplexed absolute quantification for proteomics using concatenated signature peptides encoded by QconCAT genes

1 reference

12 December 2020

Determination of protein stoichiometry within protein complexes using absolute quantification and multiple reaction monitoring

1 reference

12 December 2020

An Arabidopsis thaliana virescent mutant reveals a role for ClpR1 in plastid development.

1 reference

12 December 2020

The gene complement for proteolysis in the cyanobacterium Synechocystis sp. PCC 6803 and Arabidopsis thaliana chloroplasts

1 reference

12 December 2020

Mass spectrometric identification of oxidative modifications of tryptophan residues in proteins: chemical artifact or post-translational modification?

1 reference

12 December 2020

Structure and function of a novel type of ATP-dependent Clp protease

1 reference

12 December 2020

MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) Software Version 4.0

1 reference

12 December 2020

Evolutionary trees from DNA sequences: A maximum likelihood approach

1 reference

12 December 2020

The clpP multigene family for the ATP-dependent Clp protease in the cyanobacterium Synechococcus

1 reference

12 December 2020

Identification of a 350-kDa ClpP protease complex with 10 different Clp isoforms in chloroplasts of Arabidopsis thaliana.

1 reference

12 December 2020