(Q84464881)

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Transcript profiling provides evidence of functional divergence and expression networks among ribosomal protein gene paralogs in Brassica napus

scientific article published on 25 August 2009

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6 February 2020

Transcript profiling provides evidence of functional divergence and expression networks among ribosomal protein gene paralogs in Brassica napus (English)

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6 February 2020

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Brassica napus

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Carrie A Whittle

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6 February 2020

Joan E Krochko

2

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6 February 2020

publication date

25 August 2009

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6 February 2020

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6 February 2020

21

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6 February 2020

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6 February 2020

2203-2219

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Europe PubMed Central

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6 February 2020

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Creative Commons Attribution 4.0 International

19 January 2021

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April 2022 Public Data File from Crossref

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0 references

Preservation of duplicate genes by complementary, degenerative mutations

1 reference

https://pubmed.ncbi.nlm.nih.gov/19706795

12 December 2020

based on heuristic

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Modeling gene and genome duplications in eukaryotes

1 reference

https://pubmed.ncbi.nlm.nih.gov/19706795

12 December 2020

based on heuristic

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Coding sequence divergence between two closely related plant species: Arabidopsis thaliana and Brassica rapa ssp. pekinensis

1 reference

https://pubmed.ncbi.nlm.nih.gov/19706795

12 December 2020

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Nuclear DNA content and genome size of trout and human

1 reference

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12 December 2020

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Transcript profiling and identification of molecular markers for early microspore embryogenesis in Brassica napus

1 reference

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12 December 2020

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The gene balance hypothesis: from classical genetics to modern genomics

1 reference

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Housekeeping gene selection for real-time RT-PCR normalization in potato during biotic and abiotic stress

1 reference

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Gene conversion and the evolution of three leucine-rich repeat gene families in Arabidopsis thaliana

1 reference

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12 December 2020

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Knock-out of the plastid ribosomal protein S21 causes impaired photosynthesis and sugar-response during germination and seedling development in Arabidopsis thaliana

1 reference

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Anther development: basic principles and practical applications

1 reference

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The Arabidopsis embryonic shoot fate map.

1 reference

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12 December 2020

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Identification of protein coding regions by database similarity search

1 reference

https://pubmed.ncbi.nlm.nih.gov/19706795

12 December 2020

based on heuristic

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Adaptive evolution in the Arabidopsis MADS-box gene family inferred from its complete resolved phylogeny

1 reference

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12 December 2020

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Preferential duplication in the sparse part of yeast protein interaction network

1 reference

https://pubmed.ncbi.nlm.nih.gov/19706795

12 December 2020

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Functional divergence of duplicated genes formed by polyploidy during Arabidopsis evolution

1 reference

https://pubmed.ncbi.nlm.nih.gov/19706795

12 December 2020

based on heuristic

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Cluster analysis and display of genome-wide expression patterns

1 reference

https://pubmed.ncbi.nlm.nih.gov/19706795

12 December 2020

based on heuristic

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The organization of cytoplasmic ribosomal protein genes in the Arabidopsis genome.

1 reference

https://pubmed.ncbi.nlm.nih.gov/19706795

12 December 2020

based on heuristic

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The altered evolutionary trajectories of gene duplicates

1 reference

https://pubmed.ncbi.nlm.nih.gov/19706795

12 December 2020

based on heuristic

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Does recombination shape the distribution and evolution of tandemly arrayed genes (TAGs) in the Arabidopsis thaliana genome?

1 reference

https://pubmed.ncbi.nlm.nih.gov/19706795

12 December 2020

based on heuristic

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Nonrandom divergence of gene expression following gene and genome duplications in the flowering plant Arabidopsis thaliana

1 reference

https://pubmed.ncbi.nlm.nih.gov/19706795

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The two ribosomal protein L23A genes are differentially transcribed in Arabidopsis thaliana.

1 reference

https://pubmed.ncbi.nlm.nih.gov/19706795

12 December 2020

based on heuristic

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Dosage sensitivity and the evolution of gene families in yeast

1 reference

https://pubmed.ncbi.nlm.nih.gov/19706795

12 December 2020

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Sequence elimination and cytosine methylation are rapid and reproducible responses of the genome to wide hybridization and allopolyploidy in wheat

1 reference

https://pubmed.ncbi.nlm.nih.gov/19706795

12 December 2020

based on heuristic

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A burst of protein sequence evolution and a prolonged period of asymmetric evolution follow gene duplication in yeast

1 reference

https://pubmed.ncbi.nlm.nih.gov/19706795

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The hidden duplication past of Arabidopsis thaliana

1 reference

https://pubmed.ncbi.nlm.nih.gov/19706795

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The ribosome filter hypothesis

1 reference

https://pubmed.ncbi.nlm.nih.gov/19706795

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Gene expression intensity shapes evolutionary rates of the proteins encoded by the vertebrate genome

1 reference

https://pubmed.ncbi.nlm.nih.gov/19706795

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Analysis of expressed sequence tags indicates 35,000 human genes

1 reference

https://pubmed.ncbi.nlm.nih.gov/19706795

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Arabidopsis ribosomal proteins RPL23aA and RPL23aB are differentially targeted to the nucleolus and are disparately required for normal development

1 reference

https://pubmed.ncbi.nlm.nih.gov/19706795

12 December 2020

based on heuristic

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An S18 ribosomal protein gene copy at the Arabidopsis PFL locus affects plant development by its specific expression in meristems.

1 reference

https://pubmed.ncbi.nlm.nih.gov/19706795

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

How to infer gene networks from expression profiles

1 reference

https://pubmed.ncbi.nlm.nih.gov/19706795

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A transposon insertion in the Arabidopsis SSR16 gene causes an embryo-defective lethal mutation

1 reference

https://pubmed.ncbi.nlm.nih.gov/19706795

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Molecular evolutionary analyses of the Arabidopsis L7 ribosomal protein gene family.

1 reference

https://pubmed.ncbi.nlm.nih.gov/19706795

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The evolutionary position of subfunctionalization, downgraded

1 reference

https://pubmed.ncbi.nlm.nih.gov/19706795

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Proteomic characterization of evolutionarily conserved and variable proteins of Arabidopsis cytosolic ribosomes

1 reference

https://pubmed.ncbi.nlm.nih.gov/19706795

12 December 2020

based on heuristic

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Comparative analysis of the Arabidopsis pollen transcriptome

1 reference

https://pubmed.ncbi.nlm.nih.gov/19706795

12 December 2020

based on heuristic

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Ovule Development in Wild-Type Arabidopsis and Two Female-Sterile Mutants.

1 reference

https://pubmed.ncbi.nlm.nih.gov/19706795

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Evolution of reproductive proteins from animals and plants.

1 reference

https://pubmed.ncbi.nlm.nih.gov/19706795

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Gene expression and molecular evolution

1 reference

https://pubmed.ncbi.nlm.nih.gov/19706795

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Comparisons with Caenorhabditis (approximately 100 Mb) and Drosophila (approximately 175 Mb) using flow cytometry show genome size in Arabidopsis to be approximately 157 Mb and thus approximately 25% larger than the Arabidopsis genome initiative est

1 reference

https://pubmed.ncbi.nlm.nih.gov/19706795

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

High heterogeneity within the ribosomal proteins of the Arabidopsis thaliana 80S ribosome

1 reference

https://pubmed.ncbi.nlm.nih.gov/19706795

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Disruption of an Arabidopsis cytoplasmic ribosomal protein S13-homologous gene by transposon-mediated mutagenesis causes aberrant growth and development.

1 reference

https://pubmed.ncbi.nlm.nih.gov/19706795

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A recent polyploidy superimposed on older large-scale duplications in the Arabidopsis genome

1 reference

https://pubmed.ncbi.nlm.nih.gov/19706795

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A portrait of copy-number polymorphism in Drosophila melanogaster

1 reference

https://pubmed.ncbi.nlm.nih.gov/19706795

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The evolutionary demography of duplicate genes

1 reference

https://pubmed.ncbi.nlm.nih.gov/19706795

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Comparison of a Brassica oleracea Genetic Map With the Genome of Arabidopsis thaliana

1 reference

https://pubmed.ncbi.nlm.nih.gov/19706795

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Nuclear DNA amounts in angiosperms: progress, problems and prospects.

1 reference

https://pubmed.ncbi.nlm.nih.gov/19706795

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Global trends of whole-genome duplications revealed by the ciliate Paramecium tetraurelia

1 reference

https://pubmed.ncbi.nlm.nih.gov/19706795

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Genes duplicated by polyploidy show unequal contributions to the transcriptome and organ-specific reciprocal silencing

1 reference

https://pubmed.ncbi.nlm.nih.gov/19706795

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Conservation of the microstructure of genome segments in Brassica napus and its diploid relatives

1 reference

https://pubmed.ncbi.nlm.nih.gov/19706795

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The origins of genomic duplications in Arabidopsis.

1 reference

https://pubmed.ncbi.nlm.nih.gov/19706795

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Rapid evolution through gene duplication and subfunctionalization of the testes-specific alpha4 proteasome subunits in Drosophila

1 reference

https://pubmed.ncbi.nlm.nih.gov/19706795

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Autoregulation of ribosome biosynthesis by a translational response in fission yeast

1 reference

https://pubmed.ncbi.nlm.nih.gov/19706795

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Regulated release of L13a from the 60S ribosomal subunit as a mechanism of transcript-specific translational control

1 reference

https://pubmed.ncbi.nlm.nih.gov/19706795

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

An Arabidopsis Minute-like phenotype caused by a semi-dominant mutation in a RIBOSOMAL PROTEIN S5 gene.

1 reference

https://pubmed.ncbi.nlm.nih.gov/19706795

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Turning a hobby into a job: how duplicated genes find new functions

1 reference

https://pubmed.ncbi.nlm.nih.gov/19706795

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Chromosome triplication found across the tribe Brassiceae.

1 reference

https://pubmed.ncbi.nlm.nih.gov/19706795

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Gender-specific selection on codon usage in plant genomes

1 reference

https://pubmed.ncbi.nlm.nih.gov/19706795

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Knock-out of the plastid ribosomal protein L11 in Arabidopsis: effects on mRNA translation and photosynthesis

1 reference

https://pubmed.ncbi.nlm.nih.gov/19706795

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Analysis of the Arabidopsis cytosolic ribosome proteome provides detailed insights into its components and their post-translational modification

1 reference

https://pubmed.ncbi.nlm.nih.gov/19706795

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Functional specificity among ribosomal proteins regulates gene expression

1 reference

https://pubmed.ncbi.nlm.nih.gov/19706795

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Plant conserved non-coding sequences and paralogue evolution

1 reference

https://pubmed.ncbi.nlm.nih.gov/19706795

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The rapid evolution of reproductive proteins

1 reference

https://pubmed.ncbi.nlm.nih.gov/19706795

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Cellular reactions to gene dosage imbalance: genomic, transcriptomic and proteomic effects

1 reference

https://pubmed.ncbi.nlm.nih.gov/19706795

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The evolutionary fate and consequences of duplicate genes

1 reference

https://pubmed.ncbi.nlm.nih.gov/19706795

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

IDEG6: a web tool for detection of differentially expressed genes in multiple tag sampling experiments.

1 reference

https://pubmed.ncbi.nlm.nih.gov/19706795

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Early stages of seed development in Brassica napus: a seed coat-specific cysteine proteinase associated with programmed cell death of the inner integument

1 reference

https://pubmed.ncbi.nlm.nih.gov/19706795

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Unequal crossover and the evolution of multigene families

1 reference

https://pubmed.ncbi.nlm.nih.gov/19706795

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Analysis of the genome sequence of the flowering plant Arabidopsis thaliana

1 reference

https://pubmed.ncbi.nlm.nih.gov/19706795

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The ribosomes of Drosophila. II. Studies on intraspecific variation.

1 reference

https://pubmed.ncbi.nlm.nih.gov/19706795

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Codon usage patterns in Nematoda: analysis based on over 25 million codons in thirty-two species

1 reference

https://pubmed.ncbi.nlm.nih.gov/19706795

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Dosage-dependent gene regulation in multicellular eukaryotes: implications for dosage compensation, aneuploid syndromes, and quantitative traits

1 reference

https://pubmed.ncbi.nlm.nih.gov/19706795

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

1 reference

https://pubmed.ncbi.nlm.nih.gov/19706795

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Comparative mapping between Arabidopsis thaliana and Brassica nigra indicates that Brassica genomes have evolved through extensive genome replication accompanied by chromosome fusions and frequent rearrangements

1 reference

https://pubmed.ncbi.nlm.nih.gov/19706795

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Positive selection driving diversification in plant secondary metabolism

1 reference

https://pubmed.ncbi.nlm.nih.gov/19706795

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

CAP3: A DNA sequence assembly program

1 reference

https://pubmed.ncbi.nlm.nih.gov/19706795

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Gene-balanced duplications, like tetraploidy, provide predictable drive to increase morphological complexity

1 reference

https://pubmed.ncbi.nlm.nih.gov/19706795

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Developmental regulation of ribosomal protein L16 genes in Arabidopsis thaliana

1 reference

https://pubmed.ncbi.nlm.nih.gov/19706795

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Effects of gene expression on molecular evolution in Arabidopsis thaliana and Arabidopsis lyrata.

1 reference

https://pubmed.ncbi.nlm.nih.gov/19706795

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A Populus EST resource for plant functional genomics

1 reference

https://pubmed.ncbi.nlm.nih.gov/19706795

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Expression pattern and, surprisingly, gene length shape codon usage in Caenorhabditis, Drosophila, and Arabidopsis.

1 reference

https://pubmed.ncbi.nlm.nih.gov/19706795

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Rapid genomic changes in newly synthesized amphiploids of Triticum and Aegilops. II. Changes in low-copy coding DNA sequences

1 reference

https://pubmed.ncbi.nlm.nih.gov/19706795

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The gain and loss of genes during 600 million years of vertebrate evolution

1 reference

https://pubmed.ncbi.nlm.nih.gov/19706795

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Unravelling angiosperm genome evolution by phylogenetic analysis of chromosomal duplication events

1 reference

https://pubmed.ncbi.nlm.nih.gov/19706795

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Apical meristems: the plant's fountain of youth

1 reference

https://pubmed.ncbi.nlm.nih.gov/19706795

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Germination of Lily Pollen: Respiration and Tube Growth

1 reference

https://pubmed.ncbi.nlm.nih.gov/19706795

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1105/TPC.109.068411

1 reference

Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19706795%20AND%20SRC:MED&resulttype=core&format=json

6 February 2020

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19706795%20AND%20SRC:MED&resulttype=core&format=json

6 February 2020

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