(Q84959270)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20795690%20AND%20SRC:MED&resulttype=core&format=json

12 February 2020

title

HiRE-RNA: a high resolution coarse-grained energy model for RNA (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20795690%20AND%20SRC:MED&resulttype=core&format=json

12 February 2020

HiRE-RNA: A High Resolution Coarse-Grained Energy Model for RNA (English)

1 reference

2 July 2024

author name string

Samuela Pasquali

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20795690%20AND%20SRC:MED&resulttype=core&format=json

12 February 2020

Philippe Derreumaux

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20795690%20AND%20SRC:MED&resulttype=core&format=json

12 February 2020

language of work or name

English

1 reference

National Center for Biotechnology Information

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=20795690

2 July 2024

publication date

1 September 2010

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20795690%20AND%20SRC:MED&resulttype=core&format=json

12 February 2020

23 September 2010

1 reference

National Center for Biotechnology Information

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=20795690

full work available at URL

2 July 2024

https://pubs.acs.org/doi/pdf/10.1021/jp102497y

1 reference

Journal of Physical Chemistry B

2 July 2024

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20795690%20AND%20SRC:MED&resulttype=core&format=json

12 February 2020

volume

114

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20795690%20AND%20SRC:MED&resulttype=core&format=json

12 February 2020

issue

37

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20795690%20AND%20SRC:MED&resulttype=core&format=json

12 February 2020

page(s)

11957-11966

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20795690%20AND%20SRC:MED&resulttype=core&format=json

The chemical repertoire of natural ribozymes

12 February 2020

cites work

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1 reference

Structure of a natural guanine-responsive riboswitch complexed with the metabolite hypoxanthine

2 July 2024

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2 July 2024

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Molecular Dynamics Simulation of the Structure, Dynamics, and Thermostability of the RNA Hairpins uCACGg and cUUCGg

2 July 2024

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Simulation of the pressure and temperature folding/unfolding equilibrium of a small RNA hairpin

2 July 2024

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Probing the structural hierarchy and energy landscape of an RNA T-loop hairpin

2 July 2024

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2 July 2024

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Free-energy landscape of RNA hairpins constructed via dihedral angle principal component analysis

2 July 2024

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Elbow flexibility of the kt38 RNA kink-turn motif investigated by free-energy molecular dynamics simulations

2 July 2024

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Does native state topology determine the RNA folding mechanism?

2 July 2024

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Kinefold web server for RNA/DNA folding path and structure prediction including pseudoknots and knots

2 July 2024

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Automated de novo prediction of native-like RNA tertiary structures

2 July 2024

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Trefoil knotting revealed by molecular dynamics simulations of supercoiled DNA

2 July 2024

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Mechanical unfolding of RNA: from hairpins to structures with internal multiloops

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2 July 2024

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YUP: A Molecular Simulation Program for Coarse-Grained and Multi-Scaled Models

2 July 2024

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2 July 2024

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A coarse-grained protein force field for folding and structure prediction.

2 July 2024

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Following the aggregation of amyloid-forming peptides by computer simulations

2 July 2024

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Coarse-grained protein molecular dynamics simulations

2 July 2024

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1 reference

Self-assembly of the beta2-microglobulin NHVTLSQ peptide using a coarse-grained protein model reveals a beta-barrel species

2 July 2024

38

1 reference

Replica exchange molecular dynamics simulations of coarse-grained proteins in implicit solvent

2 July 2024

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1 reference

PEP-FOLD: an online resource for de novo peptide structure prediction.

2 July 2024

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1 reference

A'-form RNA double helix in the single crystal structure of r(UGAGCUUCGGCUC)

2 July 2024

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1 reference

Use of the Weighted Histogram Analysis Method for the Analysis of Simulated and Parallel Tempering Simulations

2 July 2024

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Solution structure of Cobalt(III)hexammine complexed to the GAAA tetraloop, and metal-ion binding to G.A mismatches

2 July 2024

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Mechanical unfolding of RNA hairpins

2 July 2024

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Multiple Probes are Required to Explore and Control the Rugged Energy Landscape of RNA Hairpins

2 July 2024

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1 reference

Structure of the intact stem and bulge of HIV-1 Psi-RNA stem-loop SL1

2 July 2024

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Exploring the energy landscape of a small RNA hairpin

2 July 2024

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1 reference

Structural insight into RNA hairpin folding intermediates

2 July 2024

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2 July 2024

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Zhang W.

2002

1931-1936

1 reference

A systematically coarse-grained model for DNA and its predictions for persistence length, stacking, twist, and chirality

2 July 2024

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1 reference

Resolving fast and slow motions in the internal loop containing stem-loop 1 of HIV-1 that are modulated by Mg2+ binding: role in the kissing-duplex structural transition

2 July 2024

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1 reference

Local molecular dynamics with coulombic interactions.

2 July 2024

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1 reference

Simulating nanoscale dielectric response.

2 July 2024

53

1 reference

2 July 2024

Identifiers

DOI

10.1021/JP102497Y

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20795690%20AND%20SRC:MED&resulttype=core&format=json

12 February 2020

1 reference