(Q85651591)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23239172%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

title

Computational study of the effects of protein tyrosine nitrations on the catalytic activity of human thymidylate synthase (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23239172%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23239172%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

2

Wojciech Rode

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23239172%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

publication date

13 December 2012

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23239172%20AND%20SRC:MED&resulttype=core&format=json

Journal of Computer - Aided Molecular Design

20 February 2020

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23239172%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

volume

27

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23239172%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

issue

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23239172%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

page(s)

45-66

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23239172%20AND%20SRC:MED&resulttype=core&format=json

A point-charge force field for molecular mechanics simulations of proteins based on condensed-phase quantum mechanical calculations

20 February 2020

cites work

1 reference

12 December 2020

Theory and applications of the generalized Born solvation model in macromolecular simulations

1 reference

12 December 2020

An efficient method for sampling the essential subspace of proteins.

1 reference

12 December 2020

Molecular dynamic behavior and binding affinity of flavonoid analogues to the cyclin dependent kinase 6/cyclin D complex.

1 reference

12 December 2020

Protein tyrosine nitration of aldolase in mast cells: a plausible pathway in nitric oxide-mediated regulation of mast cell function

1 reference

12 December 2020

Development and testing of a general amber force field

1 reference

12 December 2020

Tyrosine nitration affects thymidylate synthase properties.

1 reference

12 December 2020

Conformational dynamics along an enzymatic reaction pathway: thymidylate synthase, "the movie".

1 reference

12 December 2020

Thymidylate synthase inhibitors

1 reference

12 December 2020

Mechanism of influence of phosphorylation on serine 124 on a decrease of catalytic activity of human thymidylate synthase

1 reference

12 December 2020

Exploring the molecular basis of human manganese superoxide dismutase inactivation mediated by tyrosine 34 nitration

1 reference

12 December 2020

Essential dynamics of proteins

1 reference

12 December 2020

Nitric oxide, oxidants, and protein tyrosine nitration

1 reference

12 December 2020

Crystal structure of a deletion mutant of human thymidylate synthase Δ (7-29) and its ternary complex with Tomudex and dUMP

1 reference

12 December 2020

Molecular simulations of protein dynamics: new windows on mechanisms in biology

1 reference

12 December 2020

Endogenously nitrated proteins in mouse brain: links to neurodegenerative disease

1 reference

12 December 2020

Nitrosative protein tyrosine modifications: biochemistry and functional significance.

1 reference

12 December 2020

Top-down mass analysis of protein tyrosine nitration: comparison of electron capture dissociation with "slow-heating" tandem mass spectrometry methods

1 reference

12 December 2020

Structural basis of a protein partner switch that regulates the general stress response of α-proteobacteria

1 reference

12 December 2020

GPS-YNO2: computational prediction of tyrosine nitration sites in proteins.

1 reference

12 December 2020

Essential Dynamics: A Tool for Efficient Trajectory Compression and Management

1 reference

12 December 2020

Protein tyrosine nitration: selectivity, physicochemical and biological consequences, denitration, and proteomics methods for the identification of tyrosine-nitrated proteins.

1 reference

12 December 2020

An allosteric mechanism inferred from molecular dynamics simulations on phospholamban pentamer in lipid membranes

1 reference

12 December 2020

VMD: visual molecular dynamics

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12 December 2020

Molecular modeling and molecular dynamics simulation studies of the GSK3β/ATP/substrate complex: understanding the unique P+4 primed phosphorylation specificity for GSK3β substrates.

1 reference

12 December 2020

Functional effects of a naturally occurring amino acid substitution in human thymidylate synthase.

1 reference

12 December 2020

Ligand affinities predicted with the MM/PBSA method: dependence on the simulation method and the force field.

1 reference

12 December 2020

Inhibitory Mechanism of Caspase-6 Phosphorylation Revealed by Crystal Structures, Molecular Dynamics Simulations, and Biochemical Assays

1 reference

12 December 2020

Distribution of mutations in human thymidylate synthase yielding resistance to 5-fluorodeoxyuridine

1 reference

12 December 2020

Future potential of thymidylate synthase inhibitors in cancer therapy

1 reference

12 December 2020

Design and characterization of a mutation outside the active site of human thymidylate synthase that affects ligand binding.

1 reference

12 December 2020

Protein-protein interface-binding peptides inhibit the cancer therapy target human thymidylate synthase

1 reference

12 December 2020

Antifolate inhibitors of thymidylate synthase as anticancer drugs

1 reference

12 December 2020

Human thymidylate synthase is in the closed conformation when complexed with dUMP and raltitrexed, an antifolate drug

1 reference

12 December 2020

Calculating structures and free energies of complex molecules: combining molecular mechanics and continuum models

1 reference

12 December 2020

NO-dependent protein nitration: a cell signaling event or an oxidative inflammatory response?

1 reference

12 December 2020

In vitro and in vivo protein-bound tyrosine nitration characterized by diagonal chromatography

1 reference

12 December 2020

The catalytic mechanism and structure of thymidylate synthase

1 reference

12 December 2020

Computational studies of protein regulation by post-translational phosphorylation.

1 reference

12 December 2020

LIGPLOT: a program to generate schematic diagrams of protein-ligand interactions

1 reference

12 December 2020

Assessing the performance of the MM/PBSA and MM/GBSA methods. 1. The accuracy of binding free energy calculations based on molecular dynamics simulations

1 reference

12 December 2020

Molecular dynamics and principal components analysis of human telomeric quadruplex multimers

1 reference

12 December 2020

10.1007/S10822-012-9624-4

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23239172%20AND%20SRC:MED&resulttype=core&format=json

journals/jcamd/JarmulaR13

20 February 2020

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

1044459868

0 references

1 reference