(Q88080156)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24929246%20AND%20SRC:MED&resulttype=core&format=json

20 March 2020

title

Dubious resolution and support from published sparse supermatrices: the importance of thorough tree searches (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24929246%20AND%20SRC:MED&resulttype=core&format=json

20 March 2020

2

Pablo A Goloboff

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24929246%20AND%20SRC:MED&resulttype=core&format=json

20 March 2020

author name string

Mark P Simmons

series ordinal

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24929246%20AND%20SRC:MED&resulttype=core&format=json

20 March 2020

publication date

11 June 2014

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24929246%20AND%20SRC:MED&resulttype=core&format=json

Molecular Phylogenetics and Evolution

20 March 2020

number of pages

15

1 reference

based on heuristic

inferred from page(s)

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24929246%20AND%20SRC:MED&resulttype=core&format=json

20 March 2020

volume

78

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24929246%20AND%20SRC:MED&resulttype=core&format=json

20 March 2020

page(s)

334-348

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24929246%20AND%20SRC:MED&resulttype=core&format=json

Bayesian estimation of concordance among gene trees.

20 March 2020

cites work

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.002

Approximate likelihood-ratio test for branches: A fast, accurate, and powerful alternative

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.002

Inferring the Tree of Life: chopping a phylogenomic problem down to size?

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.002

Properties of consensus methods for inferring species trees from gene trees

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.002

Decisive data sets in phylogenomics: lessons from studies on the phylogenetic relationships of primarily wingless insects

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.002

Gene Trees and Species Trees: Molecular Systematics as One-Character Taxonomy

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.002

Patterns of macroevolution among Primates inferred from a supermatrix of mitochondrial and nuclear DNA.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.002

Maximum Likelihood and Minimum-Steps Methods for Estimating Evolutionary Trees from Data on Discrete Characters

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.002

Toward Defining the Course of Evolution: Minimum Change for a Specific Tree Topology

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.002

An expanded plastid DNA phylogeny of Orchidaceae and analysis of jackknife branch support strategy

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.002

Concatenation versus coalescence versus "concatalescence".

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.002

Resolution of a supertree/supermatrix paradox

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.002

On divide-and-conquer strategies for parsimony analysis of large data sets: Rec-I-DCM3 versus TNT.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.002

TNT, a free program for phylogenetic analysis

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.002

Phylogenetic analysis of 73 060 taxa corroborates major eukaryotic groups

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.002

New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.002

The bee tree of life: a supermatrix approach to apoid phylogeny and biogeography

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.002

Using supermatrices for phylogenetic inquiry: an example using the sedges

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.002

Potential applications and pitfalls of Bayesian inference of phylogeny

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.002

Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.002

Legume phylogeny and classification in the 21st century: Progress, prospects and lessons for other species-rich clades

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.002

The effect of ambiguous data on phylogenetic estimates obtained by maximum likelihood and Bayesian inference

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.002

A maximum pseudo-likelihood approach for estimating species trees under the coalescent model

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.002

Substitutional bias confounds inference of cyanelle origins from sequence data

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.002

Outgroup Analysis and Parsimony

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.002

The misleading effects of composite taxa in supermatrices

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.002

Cryptic failure of partitioned Bayesian phylogenetic analyses: lost in the land of long trees

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.002

Phylogenetic supermatrix analysis of GenBank sequences from 2228 papilionoid legumes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.002

Increasing the efficiency of searches for the maximum likelihood tree in a phylogenetic analysis of up to 150 nucleotide sequences

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.002

Effects of nucleotide sequence alignment on phylogeny estimation: a case study of 18S rDNAs of apicomplexa

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.002

The efficiency of different search strategies in estimating parsimony jackknife, bootstrap, and Bremer support

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.002

The Parsimony Ratchet, a New Method for Rapid Parsimony Analysis

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.002

Updating the evolutionary history of Carnivora (Mammalia): a new species-level supertree complete with divergence time estimates

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.002

Progress with methods for constructing evolutionary trees.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.002

The taming of an impossible child: a standardized all-in approach to the phylogeny of Hymenoptera using public database sequences

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.002

A large-scale phylogeny of Amphibia including over 2800 species, and a revised classification of extant frogs, salamanders, and caecilians

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.002

The phylogeny of advanced snakes (Colubroidea), with discovery of a new subfamily and comparison of support methods for likelihood trees

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.002

Impact of missing data on phylogenies inferred from empirical phylogenomic data sets

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.002

r8s: inferring absolute rates of molecular evolution and divergence times in the absence of a molecular clock

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.002

Parametric phylogenetics?

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.002

Phylogenetic supertrees: Assembling the trees of life

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.002

Phylogenomics with incomplete taxon coverage: the limits to inference

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.002

Terraces in phylogenetic tree space

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.002

Multiple Comparisons of Log-Likelihoods with Applications to Phylogenetic Inference

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.002

Radical instability and spurious branch support by likelihood when applied to matrices with non-random distributions of missing data

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.002

Misleading results of likelihood-based phylogenetic analyses in the presence of missing data

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.002

Limitations of locally sampled characters in phylogenetic analyses of sparse supermatrices

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.002

Spurious 99% bootstrap and jackknife support for unsupported clades.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.002

An artifact caused by undersampling optimal trees in supermatrix analyses of locally sampled characters.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.002

Quantification and relative severity of inflated branch-support values generated by alternative methods: an empirical example

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.002

Divergent maximum-likelihood-branch-support values for polytomies

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.002

Disparate parametric branch-support values from ambiguous characters

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.002

A 567‐Taxon Data Set for Angiosperms: The Challenges Posed by Bayesian Analyses of Large Data Sets

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.002

Phylogenetic relationships and character evolution analysis of Saxifragales using a supermatrix approach

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.002

Macroevolutionary dynamics and historical biogeography of primate diversification inferred from a species supermatrix

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.002

RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.002

A rapid bootstrap algorithm for the RAxML Web servers

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.002

TreeGraph 2: Combining and visualizing evidence from different phylogenetic analyses

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.002

DendroPy: a Python library for phylogenetic computing

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.002

Phylogeny of iguanian lizards inferred from 29 nuclear loci, and a comparison of concatenated and species-tree approaches for an ancient, rapid radiation

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.002

A supermatrix-based molecular phylogeny of the family Drosophilidae

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.002

Missing data in phylogenetic analysis: reconciling results from simulations and empirical data

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.002

Bayesian phylogenetic inference using DNA sequences: a Markov Chain Monte Carlo Method

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.002

10.1016/J.YMPEV.2014.06.002

7 January 2021

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24929246%20AND%20SRC:MED&resulttype=core&format=json

20 March 2020

1 reference