(Q89831441)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:32084337%20AND%20SRC:MED&resulttype=core&format=json

8 April 2020

title

A Quantitative Genetic Interaction Map of HIV Infection (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:32084337%20AND%20SRC:MED&resulttype=core&format=json

8 April 2020

author name string

David E Gordon

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:32084337%20AND%20SRC:MED&resulttype=core&format=json

8 April 2020

Ariane Watson

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:32084337%20AND%20SRC:MED&resulttype=core&format=json

8 April 2020

Assen Roguev

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:32084337%20AND%20SRC:MED&resulttype=core&format=json

8 April 2020

Simin Zheng

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:32084337%20AND%20SRC:MED&resulttype=core&format=json

8 April 2020

Gwendolyn M Jang

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:32084337%20AND%20SRC:MED&resulttype=core&format=json

8 April 2020

Joshua Kane

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:32084337%20AND%20SRC:MED&resulttype=core&format=json

8 April 2020

Jiewei Xu

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:32084337%20AND%20SRC:MED&resulttype=core&format=json

8 April 2020

Erica Stevenson

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:32084337%20AND%20SRC:MED&resulttype=core&format=json

8 April 2020

Danielle L Swaney

10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:32084337%20AND%20SRC:MED&resulttype=core&format=json

8 April 2020

Kathy Franks-Skiba

11

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:32084337%20AND%20SRC:MED&resulttype=core&format=json

8 April 2020

Erik Verschueren

12

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:32084337%20AND%20SRC:MED&resulttype=core&format=json

8 April 2020

Michael Shales

13

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:32084337%20AND%20SRC:MED&resulttype=core&format=json

8 April 2020

David C Crosby

14

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:32084337%20AND%20SRC:MED&resulttype=core&format=json

8 April 2020

Alan D Frankel

15

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:32084337%20AND%20SRC:MED&resulttype=core&format=json

8 April 2020

Alexander Marson

16

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:32084337%20AND%20SRC:MED&resulttype=core&format=json

8 April 2020

Ivan Marazzi

17

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:32084337%20AND%20SRC:MED&resulttype=core&format=json

8 April 2020

Gerard Cagney

18

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:32084337%20AND%20SRC:MED&resulttype=core&format=json

8 April 2020

publication date

17 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:32084337%20AND%20SRC:MED&resulttype=core&format=json

8 April 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:32084337%20AND%20SRC:MED&resulttype=core&format=json

Structural relationships between clathrin assembly proteins from the Golgi and the plasma membrane

8 April 2020

cites work

1 reference

12 December 2020

Vpr is required for efficient replication of human immunodeficiency virus type-1 in mononuclear phagocytes

1 reference

12 December 2020

Episomal vectors rapidly and stably produce high-titer recombinant retrovirus

1 reference

12 December 2020

Transcription elongation factor P-TEFb is required for HIV-1 tat transactivation in vitro

1 reference

12 December 2020

P-TEFb kinase is required for HIV Tat transcriptional activation in vivo and in vitro

1 reference

12 December 2020

Regulation of hypoxia-inducible mRNAs by the von Hippel-Lindau tumor suppressor protein requires binding to complexes containing elongins B/C and Cul2

1 reference

12 December 2020

A novel human WD protein, h-beta TrCp, that interacts with HIV-1 Vpu connects CD4 to the ER degradation pathway through an F-box motif

1 reference

12 December 2020

Cluster analysis and display of genome-wide expression patterns

1 reference

12 December 2020

The Rbx1 subunit of SCF and VHL E3 ubiquitin ligase activates Rub1 modification of cullins Cdc53 and Cul2

1 reference

12 December 2020

Interactions of the COP9 Signalosome with the E3 Ubiquitin Ligase SCFTIR1 in Mediating Auxin Response

1 reference

12 December 2020

Promotion of NEDD-CUL1 conjugate cleavage by COP9 signalosome

1 reference

12 December 2020

The Paf1 complex physically and functionally associates with transcription elongation factors in vivo

1 reference

12 December 2020

RNA polymerase II elongation factors of Saccharomyces cerevisiae: a targeted proteomics approach

1 reference

12 December 2020

CAND1 binds to unneddylated CUL1 and regulates the formation of SCF ubiquitin E3 ligase complex

1 reference

12 December 2020

Induction of APOBEC3G Ubiquitination and Degradation by an HIV-1 Vif-Cul5-SCF Complex

1 reference

12 December 2020

1 reference

12 December 2020

Open source clustering software

1 reference

12 December 2020

Java Treeview--extensible visualization of microarray data

1 reference

12 December 2020

Arabidopsis ETA2, an apparent ortholog of the human cullin-interacting protein CAND1, is required for auxin responses mediated by the SCF(TIR1) ubiquitin ligase

1 reference

12 December 2020

DEQOR: a web-based tool for the design and quality control of siRNAs

1 reference

12 December 2020

Requirement of DDX3 DEAD box RNA helicase for HIV-1 Rev-RRE export function

1 reference

12 December 2020

Therapeutic dendritic-cell vaccine for chronic HIV-1 infection

1 reference

12 December 2020

Retrograde movement of tRNAs from the cytoplasm to the nucleus in Saccharomyces cerevisiae

1 reference

12 December 2020

Exploration of the function and organization of the yeast early secretory pathway through an epistatic miniarray profile

1 reference

12 December 2020

A strategy for extracting and analyzing large-scale quantitative epistatic interaction data

1 reference

12 December 2020

Enzymatically prepared RNAi libraries

1 reference

12 December 2020

Quantitative genetic analysis in Saccharomyces cerevisiae using epistatic miniarray profiles (E-MAPs) and its application to chromatin functions

1 reference

12 December 2020

Functional dissection of protein complexes involved in yeast chromosome biology using a genetic interaction map

1 reference

12 December 2020

Lentiviral Vpr usurps Cul4-DDB1[VprBP] E3 ubiquitin ligase to modulate cell cycle

1 reference

12 December 2020

Small-sample estimation of negative binomial dispersion, with applications to SAGE data

1 reference

12 December 2020

Moderated statistical tests for assessing differences in tag abundance

1 reference

12 December 2020

The DEAD-box RNA helicase DDX3 associates with export messenger ribonucleoproteins as well as tip-associated protein and participates in translational control

1 reference

12 December 2020

Conservation and rewiring of functional modules revealed by an epistasis map in fission yeast.

1 reference

12 December 2020

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

1 reference

12 December 2020

An inhibitor of NEDD8-activating enzyme as a new approach to treat cancer

1 reference

12 December 2020

Rapid creation and quantitative monitoring of high coverage shRNA libraries

1 reference

12 December 2020

No strings attached: the ESCRT machinery in viral budding and cytokinesis

1 reference

12 December 2020

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

1 reference

12 December 2020

Hemagglutinin-pseudotyped green fluorescent protein-expressing influenza viruses for the detection of influenza virus neutralizing antibodies

1 reference

12 December 2020

The Paf1 complex: platform or player in RNA polymerase II transcription?

1 reference

12 December 2020

A scaling normalization method for differential expression analysis of RNA-seq data

1 reference

12 December 2020

Flexible use of nuclear import pathways by HIV-1.

1 reference

12 December 2020

HIV-1 Tat assembles a multifunctional transcription elongation complex and stably associates with the 7SK snRNP

1 reference

12 December 2020

Quantitative genetic interactions reveal biological modularity

1 reference

12 December 2020

Quantitative genetic interaction mapping using the E-MAP approach

1 reference

12 December 2020

Transportin 3 promotes a nuclear maturation step required for efficient HIV-1 integration.

1 reference

12 December 2020

The control of HIV transcription: keeping RNA polymerase II on track

1 reference

12 December 2020

Inhibition of HIV-1 infection by TNPO3 depletion is determined by capsid and detectable after viral cDNA enters the nucleus

1 reference

12 December 2020

Host cell interactome of HIV-1 Rev includes RNA helicases involved in multiple facets of virus production

1 reference

12 December 2020

Global landscape of HIV-human protein complexes

1 reference

12 December 2020

The ubiquitin E1 enzyme Ube1 mediates NEDD8 activation under diverse stress conditions

1 reference

12 December 2020

Ccr4-Not complex: the control freak of eukaryotic cells

1 reference

12 December 2020

Hierarchical modularity and the evolution of genetic interactomes across species.

1 reference

12 December 2020

RSeQC: quality control of RNA-seq experiments

1 reference

12 December 2020

CPSF6 Defines a Conserved Capsid Interface that Modulates HIV-1 Replication

1 reference

12 December 2020

STAR: ultrafast universal RNA-seq aligner

1 reference

12 December 2020

Affordable luciferase reporter assay for cell-based high-throughput screening.

1 reference

12 December 2020

C2ORF29/CNOT11 and CNOT10 form a new module of the CCR4-NOT complex

1 reference

12 December 2020

Inhibition of a NEDD8 Cascade Restores Restriction of HIV by APOBEC3G

1 reference

12 December 2020

NOT10 and C2orf29/NOT11 form a conserved module of the CCR4-NOT complex that docks onto the NOT1 N-terminal domain

1 reference

12 December 2020

From systems to structure: bridging networks and mechanism

1 reference

12 December 2020

hCAF1/CNOT7 regulates interferon signalling by targeting STAT1.

1 reference

12 December 2020

Quantitative genetic-interaction mapping in mammalian cells

1 reference

12 December 2020

TNPO3 protects HIV-1 replication from CPSF6-mediated capsid stabilization in the host cell cytoplasm.

1 reference

12 December 2020

Mapping genetic interactions in human cancer cells with RNAi and multiparametric phenotyping.

1 reference

12 December 2020

Enrichr: interactive and collaborative HTML5 gene list enrichment analysis tool

1 reference

12 December 2020

A simple high-content cell cycle assay reveals frequent discrepancies between cell number and ATP and MTS proliferation assays

1 reference

12 December 2020

From structure to systems: high-resolution, quantitative genetic analysis of RNA polymerase II.

1 reference

12 December 2020

featureCounts: an efficient general purpose program for assigning sequence reads to genomic features

1 reference

12 December 2020

Building and remodelling Cullin-RING E3 ubiquitin ligases

1 reference

12 December 2020

Exome analysis of HIV patients submitted to dendritic cells therapeutic vaccine reveals an association of CNOT1 gene with response to the treatment.

1 reference

12 December 2020

MSstats: an R package for statistical analysis of quantitative mass spectrometry-based proteomic experiments

1 reference

12 December 2020

Insights into the structure and architecture of the CCR4-NOT complex

1 reference

12 December 2020

Accurate proteome-wide label-free quantification by delayed normalization and maximal peptide ratio extraction, termed MaxLFQ.

1 reference

12 December 2020

Easy quantitative assessment of genome editing by sequence trace decomposition

1 reference

12 December 2020

COSMID: A Web-based Tool for Identifying and Validating CRISPR/Cas Off-target Sites

1 reference

12 December 2020

Protein neddylation: beyond cullin-RING ligases

1 reference

12 December 2020

Global mapping of herpesvirus-host protein complexes reveals a transcription strategy for late genes

1 reference

12 December 2020

A combined proteomics/genomics approach links hepatitis C virus infection with nonsense-mediated mRNA decay

1 reference

12 December 2020

Global Mapping of the Inc-Human Interactome Reveals that Retromer Restricts Chlamydia Infection

1 reference

12 December 2020

Chemically modified guide RNAs enhance CRISPR-Cas genome editing in human primary cells

1 reference

12 December 2020

Structure of mammalian eIF3 in the context of the 43S preinitiation complex

1 reference

12 December 2020

Enrichr: a comprehensive gene set enrichment analysis web server 2016 update

1 reference

12 December 2020

Insights into APC/C: from cellular function to diseases and therapeutics

1 reference

12 December 2020

Fluorescence-linked Antigen Quantification (FLAQ) Assay for Fast Quantification of HIV-1 p24(Gag)

1 reference

12 December 2020

A global genetic interaction network maps a wiring diagram of cellular function

1 reference

12 December 2020

A Cas9 Ribonucleoprotein Platform for Functional Genetic Studies of HIV-Host Interactions in Primary Human T Cells

1 reference

12 December 2020

Human eIF3b and eIF3a serve as the nucleation core for the assembly of eIF3 into two interconnected modules: the yeast-like core and the octamer

1 reference

12 December 2020

Combinatorial CRISPR-Cas9 screens for de novo mapping of genetic interactions.

1 reference

12 December 2020

Genetic interaction mapping in mammalian cells using CRISPR interference

1 reference

12 December 2020

Architecture of the human interactome defines protein communities and disease networks

1 reference

12 December 2020

DDX6 Represses Aberrant Activation of Interferon-Stimulated Genes

1 reference

12 December 2020

Mapping the Genetic Landscape of Human Cells

1 reference

12 December 2020

An Mtb-Human Protein-Protein Interaction Map Identifies a Switch between Host Antiviral and Antibacterial Responses

1 reference

12 December 2020

Multiple Routes to Oncogenesis Are Promoted by the Human Papillomavirus-Host Protein Network

1 reference

12 December 2020

Protein Interaction Mapping Identifies RBBP6 as a Negative Regulator of Ebola Virus Replication

1 reference

12 December 2020

Comparative Flavivirus-Host Protein Interaction Mapping Reveals Mechanisms of Dengue and Zika Virus Pathogenesis

1 reference

12 December 2020

Integrated systems approach defines the antiviral pathways conferring protection by the RV144 HIV vaccine

1 reference

12 December 2020

Identification of antiviral roles for the exon-junction complex and nonsense-mediated decay in flaviviral infection

1 reference

12 December 2020

Enterovirus pathogenesis requires the host methyltransferase SETD3

1 reference

12 December 2020