(Q90315088)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31558434%20AND%20SRC:MED&resulttype=core&format=json

12 April 2020

title

Novel dynamics of human mucociliary differentiation revealed by single-cell RNA sequencing of nasal epithelial cultures (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31558434%20AND%20SRC:MED&resulttype=core&format=json

single cell transcriptomics

12 April 2020

main subject

1 reference

A curated database reveals trends in single-cell transcriptomics

7 February 2021

13

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31558434%20AND%20SRC:MED&resulttype=core&format=json

Laure-Emmanuelle Zaragosi

12 April 2020

14

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31558434%20AND%20SRC:MED&resulttype=core&format=json

12 April 2020

3

Kevin Lebrigand

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31558434%20AND%20SRC:MED&resulttype=core&format=json

12 April 2020

7

Virginie Magnone

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31558434%20AND%20SRC:MED&resulttype=core&format=json

12 April 2020

Brice Marcet

12

0 references

author name string

Sandra Ruiz García

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31558434%20AND%20SRC:MED&resulttype=core&format=json

12 April 2020

Marie Deprez

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31558434%20AND%20SRC:MED&resulttype=core&format=json

12 April 2020

Amélie Cavard

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31558434%20AND%20SRC:MED&resulttype=core&format=json

12 April 2020

Agnès Paquet

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31558434%20AND%20SRC:MED&resulttype=core&format=json

12 April 2020

Marie-Jeanne Arguel

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31558434%20AND%20SRC:MED&resulttype=core&format=json

12 April 2020

Marin Truchi

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31558434%20AND%20SRC:MED&resulttype=core&format=json

12 April 2020

Ignacio Caballero

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31558434%20AND%20SRC:MED&resulttype=core&format=json

12 April 2020

Sylvie Leroy

10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31558434%20AND%20SRC:MED&resulttype=core&format=json

12 April 2020

Charles-Hugo Marquette

11

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31558434%20AND%20SRC:MED&resulttype=core&format=json

12 April 2020

publication date

23 October 2019

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31558434%20AND%20SRC:MED&resulttype=core&format=json

external data available at URL

12 April 2020

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE121600

1 reference

A curated database reveals trends in single-cell transcriptomics

7 February 2021

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31558434%20AND%20SRC:MED&resulttype=core&format=json

12 April 2020

volume

146

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31558434%20AND%20SRC:MED&resulttype=core&format=json

12 April 2020

issue

20

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31558434%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution 4.0 International

12 April 2020

copyright license

start time

8 February 2021

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

describes a project that uses

respiratory tract

1 reference

A curated database reveals trends in single-cell transcriptomics

7 February 2021

10x Genomics Chromium

1 reference

A curated database reveals trends in single-cell transcriptomics

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=pmc&rettype=xml&id=6826037

7 February 2021

ggplot2

object named as

ggplot2

2 references

10 June 2022

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

edgeR

object named as

edgeR

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

DESeq2

object named as

DESeq2

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

cites work

Xenobiotic metabolism in Clara cells and alveolar type II cells isolated from lungs of rats treated with beta-naphthoflavone

1 reference

12 December 2020

Number and proliferation of basal and parabasal cells in normal human airway epithelium.

1 reference

12 December 2020

CIR, a corepressor linking the DNA binding factor CBF1 to the histone deacetylase complex

1 reference

12 December 2020

Number and proliferation of clara cells in normal human airway epithelium

1 reference

12 December 2020

The bHLH gene Hes6, an inhibitor of Hes1, promotes neuronal differentiation

1 reference

12 December 2020

Pontin52 and reptin52 function as antagonistic regulators of beta-catenin signalling activity

1 reference

12 December 2020

Epithelial cell differentiation pathways in the human prostate: identification of intermediate phenotypes by keratin expression

1 reference

12 December 2020

IL-13 alters mucociliary differentiation and ciliary beating of human respiratory epithelial cells

1 reference

12 December 2020

The ultrastructure of nasal mucosa in children with asthma.

1 reference

12 December 2020

Secretoglobins SCGB3A1 and SCGB3A2 define secretory cell subsets in mouse and human airways

1 reference

12 December 2020

Clara cell secretory protein modulates lung inflammatory and immune responses to respiratory syncytial virus infection

1 reference

12 December 2020

Fringe glycosyltransferases differentially modulate Notch1 proteolysis induced by Delta1 and Jagged1

1 reference

12 December 2020

The histidine triad protein Hint1 interacts with Pontin and Reptin and inhibits TCF-beta-catenin-mediated transcription

1 reference

12 December 2020

Mucus in chronic airway diseases: sorting out the sticky details

1 reference

12 December 2020

Blocking airway mucous cell metaplasia by inhibiting EGFR antiapoptosis and IL-13 transdifferentiation signals.

1 reference

12 December 2020

Jagged 1 is a beta-catenin target gene required for ectopic hair follicle formation in adult epidermis

1 reference

12 December 2020

Basal-like phenotype is not associated with patient survival in estrogen-receptor-negative breast cancers.

1 reference

12 December 2020

IL-13 regulates cilia loss and foxj1 expression in human airway epithelium

1 reference

12 December 2020

Epithelial cell-extracellular matrix interactions and stem cells in airway epithelial regeneration.

1 reference

12 December 2020

beta-Catenin is not necessary for maintenance or repair of the bronchiolar epithelium

1 reference

12 December 2020

Attenuation of Notch signalling by the Down-syndrome-associated kinase DYRK1A.

1 reference

12 December 2020

The role of Scgb1a1+ Clara cells in the long-term maintenance and repair of lung airway, but not alveolar, epithelium

1 reference

12 December 2020

Notch signaling controls the balance of ciliated and secretory cell fates in developing airways

1 reference

12 December 2020

Advances in mucous cell metaplasia: a plug for mucus as a therapeutic focus in chronic airway disease

1 reference

12 December 2020

A novel lung metastasis signature links Wnt signaling with cancer cell self-renewal and epithelial-mesenchymal transition in basal-like breast cancer

1 reference

12 December 2020

Basal cells as stem cells of the mouse trachea and human airway epithelium

1 reference

12 December 2020

SPDEF is required for mouse pulmonary goblet cell differentiation and regulates a network of genes associated with mucus production

1 reference

12 December 2020

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

1 reference

12 December 2020

Canonical Notch signaling in the developing lung is required for determination of arterial smooth muscle cells and selection of Clara versus ciliated cell fate

1 reference

12 December 2020

Tracheal Basal cells: a facultative progenitor cell pool

1 reference

12 December 2020

Goblet cells are derived from a FOXJ1-expressing progenitor in a human airway epithelium

1 reference

12 December 2020

Rank-rank hypergeometric overlap: identification of statistically significant overlap between gene-expression signatures

1 reference

12 December 2020

Control of vertebrate multiciliogenesis by miR-449 through direct repression of the Delta/Notch pathway

1 reference

12 December 2020

Notch-dependent differentiation of adult airway basal stem cells

1 reference

12 December 2020

β-catenin dosage is a critical determinant of tracheal basal cell fate determination

1 reference

12 December 2020

Proteomic profiling of secretome and adherent plasma membranes from distinct mammary epithelial cell subpopulations.

1 reference

12 December 2020

MicroRNA-based silencing of Delta/Notch signaling promotes multiple cilia formation

1 reference

12 December 2020

Direct and indirect roles for β-catenin in facultative basal progenitor cell differentiation

1 reference

12 December 2020

Ciliated cells of pseudostratified airway epithelium do not become mucous cells after ovalbumin challenge

1 reference

12 December 2020

Regulation of Wnt4 in chronic obstructive pulmonary disease

1 reference

12 December 2020

Bronchial epithelium as a target for innovative treatments in asthma

1 reference

12 December 2020

Stochastic homeostasis in human airway epithelium is achieved by neutral competition of basal cell progenitors

1 reference

12 December 2020

Effects of notch signaling on regulation of myeloid cell differentiation in cancer

1 reference

12 December 2020

Analysis of Notch signaling-dependent gene expression in developing airways reveals diversity of Clara cells

1 reference

12 December 2020

Reconstructing lineage hierarchies of the distal lung epithelium using single-cell RNA-seq

1 reference

12 December 2020

A population of progenitor cells in the basal and intermediate layers of the murine bladder urothelium contributes to urothelial development and regeneration

1 reference

12 December 2020

Protein kinase CK2 both promotes robust proliferation and inhibits the proliferative fate in the C. elegans germ line.

1 reference

12 December 2020

Lung regeneration: mechanisms, applications and emerging stem cell populations

1 reference

12 December 2020

Repair and regeneration of the respiratory system: complexity, plasticity, and mechanisms of lung stem cell function

1 reference

12 December 2020

Casein kinase 1 and Wnt/β-catenin signaling

1 reference

12 December 2020

Notch3-Jagged signaling controls the pool of undifferentiated airway progenitors

1 reference

12 December 2020

Injury induces direct lineage segregation of functionally distinct airway basal stem/progenitor cell subpopulations

1 reference

12 December 2020

TGF-β Signaling Regulates the Differentiation of Motile Cilia

1 reference

12 December 2020

Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets

1 reference

12 December 2020

Hairy and Enhancer of Split 6 (Hes6) Deficiency in Mouse Impairs Neuroblast Differentiation in Dentate Gyrus Without Affecting Cell Proliferation and Integration into Mature Neurons

1 reference

12 December 2020

Clonal Dynamics Reveal Two Distinct Populations of Basal Cells in Slow-Turnover Airway Epithelium.

1 reference

12 December 2020

Parent stem cells can serve as niches for their daughter cells

1 reference

12 December 2020

miR-34/449 control apical actin network formation during multiciliogenesis through small GTPase pathways

1 reference

12 December 2020

The Notch and Wnt pathways regulate stemness and differentiation in human fallopian tube organoids

1 reference

12 December 2020

Dual SMAD Signaling Inhibition Enables Long-Term Expansion of Diverse Epithelial Basal Cells.

1 reference

12 December 2020

Regulation of actin dynamics by WNT-5A: implications for human airway smooth muscle contraction

1 reference

12 December 2020

A step-by-step workflow for low-level analysis of single-cell RNA-seq data with Bioconductor.

1 reference

12 December 2020

Scater: pre-processing, quality control, normalization and visualization of single-cell RNA-seq data in R

1 reference

12 December 2020

Characterizing isomiR variants within the microRNA-34/449 family

1 reference

12 December 2020

Visualization and analysis of single-cell RNA-seq data by kernel-based similarity learning

1 reference

12 December 2020

Deconstructing Olfactory Stem Cell Trajectories at Single-Cell Resolution

1 reference

12 December 2020

Reversed graph embedding resolves complex single-cell trajectories.

1 reference

12 December 2020

Psychrophilic proteases dramatically reduce single-cell RNA-seq artifacts: a molecular atlas of kidney development

1 reference

12 December 2020

Modulation of Wnt signaling is essential for the differentiation of ciliated epithelial cells in human airways

1 reference

12 December 2020

Calibrated mitotic oscillator drives motile ciliogenesis

1 reference

12 December 2020

Construction of developmental lineage relationships in the mouse mammary gland by single-cell RNA profiling.

1 reference

12 December 2020

Single-cell analysis reveals the continuum of human lympho-myeloid progenitor cells.

1 reference

12 December 2020

SCANPY: large-scale single-cell gene expression data analysis.

1 reference

12 December 2020

Batch effects in single-cell RNA-sequencing data are corrected by matching mutual nearest neighbors

1 reference

12 December 2020

scmap: projection of single-cell RNA-seq data across data sets

1 reference

12 December 2020

Cell type atlas and lineage tree of a whole complex animal by single-cell transcriptomics.

1 reference

12 December 2020

Recovering Gene Interactions from Single-Cell Data Using Data Diffusion

1 reference

12 December 2020

A revised airway epithelial hierarchy includes CFTR-expressing ionocytes

1 reference

12 December 2020

A single-cell atlas of the airway epithelium reveals the CFTR-rich pulmonary ionocyte

1 reference

12 December 2020

RNA velocity of single cells

1 reference

12 December 2020

Allergic inflammatory memory in human respiratory epithelial progenitor cells

1 reference

12 December 2020

Cyclin-dependent kinase control of motile ciliogenesis

1 reference

12 December 2020

Regulation of Human Airway Epithelial Tissue Stem Cell Differentiation by β-Catenin, P300, and CBP

1 reference

12 December 2020

The "one airway, one disease" concept in light of Th2 inflammation

1 reference

12 December 2020

CDC20B is required for deuterosome-mediated centriole production in multiciliated cells

1 reference

12 December 2020

Characterization of cell fate probabilities in single-cell data with Palantir

1 reference

12 December 2020

A cellular census of human lungs identifies novel cell states in health and in asthma

1 reference

12 December 2020

Identifiers

DOI

10.1242/DEV.177428

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31558434%20AND%20SRC:MED&resulttype=core&format=json

12 April 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31558434%20AND%20SRC:MED&resulttype=core&format=json

12 April 2020

PubMed publication ID

31558434

1 reference