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One thousand plant transcriptomes and the phylogenomics of green plants
scientific article published on 23 October 2019
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scholarly article
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Europe PubMed Central
PMCID
6872490
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31645766%20AND%20SRC:MED&resulttype=core&format=json
retrieved
17 April 2020
title
One thousand plant transcriptomes and the phylogenomics of green plants
(English)
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stated in
Europe PubMed Central
PMCID
6872490
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31645766%20AND%20SRC:MED&resulttype=core&format=json
retrieved
17 April 2020
author name string
One Thousand Plant Transcriptomes Initiative
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1
1 reference
stated in
Europe PubMed Central
PMCID
6872490
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31645766%20AND%20SRC:MED&resulttype=core&format=json
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17 April 2020
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English
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publication date
23 October 2019
1 reference
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Europe PubMed Central
PMCID
6872490
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31645766%20AND%20SRC:MED&resulttype=core&format=json
retrieved
17 April 2020
published in
Nature
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Europe PubMed Central
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6872490
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31645766%20AND%20SRC:MED&resulttype=core&format=json
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17 April 2020
volume
574
1 reference
stated in
Europe PubMed Central
PMCID
6872490
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31645766%20AND%20SRC:MED&resulttype=core&format=json
retrieved
17 April 2020
issue
7780
1 reference
stated in
Europe PubMed Central
PMCID
6872490
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31645766%20AND%20SRC:MED&resulttype=core&format=json
retrieved
17 April 2020
page(s)
679-685
1 reference
stated in
Europe PubMed Central
PMCID
6872490
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31645766%20AND%20SRC:MED&resulttype=core&format=json
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17 April 2020
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A link between LEAFY and B-gene homologues in Welwitschia mirabilis sheds light on ancestral mechanisms prefiguring floral development.
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Fast Coalescent-Based Computation of Local Branch Support from Quartet Frequencies
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Weighted Statistical Binning: Enabling Statistically Consistent Genome-Scale Phylogenetic Analyses
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Fragmentary Gene Sequences Negatively Impact Gene Tree and Species Tree Reconstruction
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Evaluating Summary Methods for Multilocus Species Tree Estimation in the Presence of Incomplete Lineage Sorting
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Testing for Polytomies in Phylogenetic Species Trees Using Quartet Frequencies.
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7 January 2021
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Missing data in phylogenetic analysis: reconciling results from simulations and empirical data
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Phylogenomic inference in extremis: A case study with mycoheterotroph plastomes
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ExaML version 3: a tool for phylogenomic analyses on supercomputers
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On lines and planes of closest fit to systems of points in space
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FastTree 2--approximately maximum-likelihood trees for large alignments
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GeneWise and Genomewise
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7 January 2021
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Phytozome: a comparative platform for green plant genomics
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PAML 4: phylogenetic analysis by maximum likelihood
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Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41586-019-1693-2
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7 January 2021
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Multiple large-scale gene and genome duplications during the evolution of hexapods.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41586-019-1693-2
retrieved
7 January 2021
based on heuristic
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Detecting and locating whole genome duplications on a phylogeny: a probabilistic approach
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41586-019-1693-2
retrieved
7 January 2021
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Analysis of phylogenomic datasets reveals conflict, concordance, and gene duplications with examples from animals and plants.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41586-019-1693-2
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7 January 2021
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MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41586-019-1693-2
retrieved
7 January 2021
based on heuristic
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MUSCLE: multiple sequence alignment with high accuracy and high throughput
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41586-019-1693-2
retrieved
7 January 2021
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GenPhyloData: realistic simulation of gene family evolution
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41586-019-1693-2
retrieved
7 January 2021
based on heuristic
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Evaluating and Characterizing Ancient Whole-Genome Duplications in Plants with Gene Count Data
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41586-019-1693-2
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Genome-wide phylogenetic comparative analysis of plant transcriptional regulation: a timeline of loss, gain, expansion, and correlation with complexity
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41586-019-1693-2
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Clustering of highly homologous sequences to reduce the size of large protein databases
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41586-019-1693-2
retrieved
7 January 2021
based on heuristic
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Tolerating some redundancy significantly speeds up clustering of large protein databases.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41586-019-1693-2
retrieved
7 January 2021
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Accelerated Profile HMM Searches
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41586-019-1693-2
retrieved
7 January 2021
based on heuristic
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Two ancient classes of MIKC-type MADS-box genes are present in the moss Physcomitrella patens
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41586-019-1693-2
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7 January 2021
based on heuristic
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Identifiers
DOI
10.1038/S41586-019-1693-2
1 reference
stated in
Europe PubMed Central
PMCID
6872490
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31645766%20AND%20SRC:MED&resulttype=core&format=json
retrieved
17 April 2020
PMCID
6872490
1 reference
stated in
Europe PubMed Central
PMCID
6872490
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31645766%20AND%20SRC:MED&resulttype=core&format=json
retrieved
17 April 2020
PubMed ID
31645766
1 reference
stated in
Europe PubMed Central
PMCID
6872490
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31645766%20AND%20SRC:MED&resulttype=core&format=json
retrieved
17 April 2020
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