(Q91525225)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31780648%20AND%20SRC:MED&resulttype=core&format=json

23 April 2020

title

The art of using t-SNE for single-cell transcriptomics (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31780648%20AND%20SRC:MED&resulttype=core&format=json

23 April 2020

1 reference

t-Distributed Stochastic Neighbor Embedding

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1

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31780648%20AND%20SRC:MED&resulttype=core&format=json

23 April 2020

Philipp Berens

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31780648%20AND%20SRC:MED&resulttype=core&format=json

23 April 2020

publication date

28 November 2019

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31780648%20AND%20SRC:MED&resulttype=core&format=json

23 April 2020

published in

Nature Communications

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31780648%20AND%20SRC:MED&resulttype=core&format=json

23 April 2020

volume

10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31780648%20AND%20SRC:MED&resulttype=core&format=json

23 April 2020

issue

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31780648%20AND%20SRC:MED&resulttype=core&format=json

23 April 2020

page(s)

5416

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31780648%20AND%20SRC:MED&resulttype=core&format=json

describes a project that uses

23 April 2020

Jupyter notebook file

1 reference

Entering the era of single-cell transcriptomics in biology and medicine

PubMed Central

cites work

1 reference

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7 January 2021

Disentangling neural cell diversity using single-cell transcriptomics

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7 January 2021

Shared and distinct transcriptomic cell types across neocortical areas

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7 January 2021

Single-cell transcriptomics of 20 mouse organs creates a Tabula Muris

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7 January 2021

Molecular Architecture of the Mouse Nervous System

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7 January 2021

Mapping the Mouse Cell Atlas by Microwell-Seq.

1 reference

https://api.crossref.org/works/10.1038%2FS41467-019-13056-X

7 January 2021

Molecular Diversity and Specializations among the Cells of the Adult Mouse Brain

1 reference

https://api.crossref.org/works/10.1038%2FS41467-019-13056-X

7 January 2021

The single-cell transcriptional landscape of mammalian organogenesis

1 reference

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7 January 2021

UMAP: Uniform Manifold Approximation and Projection

1 reference

https://api.crossref.org/works/10.1038%2FS41467-019-13056-X

7 January 2021

Dimensionality reduction for visualizing single-cell data using UMAP

1 reference

https://api.crossref.org/works/10.1038%2FS41467-019-13056-X

7 January 2021

How to Use t-SNE Effectively

1 reference

https://api.crossref.org/works/10.1038%2FS41467-019-13056-X

7 January 2021

Automated optimized parameters for T-distributed stochastic neighbor embedding improve visualization and analysis of large datasets

1 reference

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7 January 2021

Fast interpolation-based t-SNE for improved visualization of single-cell RNA-seq data

1 reference

https://api.crossref.org/works/10.1038%2FS41467-019-13056-X

7 January 2021

viSNE enables visualization of high dimensional single-cell data and reveals phenotypic heterogeneity of leukemia

1 reference

https://api.crossref.org/works/10.1038%2FS41467-019-13056-X

7 January 2021

Visual analysis of mass cytometry data by hierarchical stochastic neighbour embedding reveals rare cell types.

1 reference

https://api.crossref.org/works/10.1038%2FS41467-019-13056-X

7 January 2021

Application of t-SNE to human genetic data

1 reference

https://api.crossref.org/works/10.1038%2FS41467-019-13056-X

7 January 2021

SCANPY: large-scale single-cell gene expression data analysis.

1 reference

https://api.crossref.org/works/10.1038%2FS41467-019-13056-X

7 January 2021

Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets

1 reference

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7 January 2021

Comprehensive Classification of Retinal Bipolar Neurons by Single-Cell Transcriptomics

1 reference

https://api.crossref.org/works/10.1038%2FS41467-019-13056-X

7 January 2021

Classes and continua of hippocampal CA1 inhibitory neurons revealed by single-cell transcriptomics

1 reference

https://api.crossref.org/works/10.1038%2FS41467-019-13056-X

7 January 2021

Electrophysiological, transcriptomic and morphologic profiling of single neurons using Patch-seq

1 reference

https://api.crossref.org/works/10.1038%2FS41467-019-13056-X

7 January 2021

scmap: projection of single-cell RNA-seq data across data sets

1 reference

https://api.crossref.org/works/10.1038%2FS41467-019-13056-X

7 January 2021

Mapping the stereotyped behaviour of freely moving fruit flies.

1 reference

https://api.crossref.org/works/10.1038%2FS41467-019-13056-X

7 January 2021

Adult mouse cortical cell taxonomy revealed by single cell transcriptomics

1 reference

https://api.crossref.org/works/10.1038%2FS41467-019-13056-X

7 January 2021

Clustering with t-SNE, provably

1 reference

https://api.crossref.org/works/10.1038%2FS41467-019-13056-X

7 January 2021

Pax6, Tbr2, and Tbr1 are expressed sequentially by radial glia, intermediate progenitor cells, and postmitotic neurons in developing neocortex

1 reference

https://api.crossref.org/works/10.1038%2FS41467-019-13056-X

7 January 2021

Developmental Emergence of Adult Neural Stem Cells as Revealed by Single-Cell Transcriptional Profiling

1 reference

https://api.crossref.org/works/10.1038%2FS41467-019-13056-X

7 January 2021

bigSCale: an analytical framework for big-scale single-cell data.

1 reference

https://api.crossref.org/works/10.1038%2FS41467-019-13056-X

7 January 2021

Identification of cell types in a mouse brain single-cell atlas using low sampling coverage

1 reference

https://api.crossref.org/works/10.1038%2FS41467-019-13056-X

7 January 2021

Heavy-tailed kernels reveal a finer cluster structure in t-SNE visualisations

1 reference

https://api.crossref.org/works/10.1038%2FS41467-019-13056-X

7 January 2021

Generalizable and Scalable Visualization of Single-Cell Data Using Neural Networks

1 reference

https://api.crossref.org/works/10.1038%2FS41467-019-13056-X

7 January 2021

Interpretable dimensionality reduction of single cell transcriptome data with deep generative models.

1 reference

https://api.crossref.org/works/10.1038%2FS41467-019-13056-X

7 January 2021

Hierarchical Stochastic Neighbor Embedding

1 reference

https://api.crossref.org/works/10.1038%2FS41467-019-13056-X

7 January 2021

PAGA: graph abstraction reconciles clustering with trajectory inference through a topology preserving map of single cells

1 reference

https://api.crossref.org/works/10.1038%2FS41467-019-13056-X

7 January 2021

Approximated and User Steerable tSNE for Progressive Visual Analytics.

1 reference

https://api.crossref.org/works/10.1038%2FS41467-019-13056-X

7 January 2021

M3Drop: dropout-based feature selection for scRNASeq

1 reference

https://api.crossref.org/works/10.1038%2FS41467-019-13056-X

7 January 2021

Massively parallel digital transcriptional profiling of single cells

1 reference

https://api.crossref.org/works/10.1038%2FS41467-019-13056-X

7 January 2021

10.1038/S41467-019-13056-X

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31780648%20AND%20SRC:MED&resulttype=core&format=json

23 April 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31780648%20AND%20SRC:MED&resulttype=core&format=json

23 April 2020

PubMed publication ID

31780648

1 reference