(Q55399288)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29784946%20AND%20SRC:MED&resulttype=core&format=json

27 March 2020

title

Interpretable dimensionality reduction of single cell transcriptome data with deep generative models (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29784946%20AND%20SRC:MED&resulttype=core&format=json

27 March 2020

main subject

transcriptome

0 references

dimensionality reduction

1 reference

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29784946%20AND%20SRC:MED&resulttype=core&format=json

27 March 2020

3

Sohrab P Shah

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29784946%20AND%20SRC:MED&resulttype=core&format=json

27 March 2020

1

Jiarui Ding

1 reference

http://europepmc.org/abstract/PMC/5962608

6 July 2018

language of work or name

English

0 references

publication date

21 May 2018

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29784946%20AND%20SRC:MED&resulttype=core&format=json

27 March 2020

published in

Nature Communications

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29784946%20AND%20SRC:MED&resulttype=core&format=json

27 March 2020

volume

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29784946%20AND%20SRC:MED&resulttype=core&format=json

27 March 2020

issue

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29784946%20AND%20SRC:MED&resulttype=core&format=json

27 March 2020

page(s)

2002

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29784946%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution 4.0 International

27 March 2020

copyright license

start time

21 May 2018

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

Gating mass cytometry data by deep learning.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5962608

Comprehensive single-cell transcriptional profiling of a multicellular organism.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5962608

Normalizing single-cell RNA sequencing data: challenges and opportunities

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5962608

Probabilistic modeling of bifurcations in single-cell gene expression data using a Bayesian mixture of factor analyzers.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5962608

SCnorm: robust normalization of single-cell RNA-seq data

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5962608

Power analysis of single-cell RNA-sequencing experiments

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5962608

Visualization and analysis of single-cell RNA-seq data by kernel-based similarity learning

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5962608

Comparative Analysis of Single-Cell RNA Sequencing Methods.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5962608

Seq-Well: portable, low-cost RNA sequencing of single cells at high throughput

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5962608

Single-cell mRNA quantification and differential analysis with Census

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5962608

Massively parallel digital transcriptional profiling of single cells

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5962608

Revealing the vectors of cellular identity with single-cell genomics

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5962608

Single-cell RNA-seq supports a developmental hierarchy in human oligodendroglioma

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5962608

FastProject: a tool for low-dimensional analysis of single-cell RNA-Seq data

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5962608

densityCut: an efficient and versatile topological approach for automatic clustering of biological data

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5962608

Wishbone identifies bifurcating developmental trajectories from single-cell data

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5962608

Dissecting the multicellular ecosystem of metastatic melanoma by single-cell RNA-seq

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5962608

CEL-Seq2: sensitive highly-multiplexed single-cell RNA-Seq

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5962608

pcaReduce: hierarchical clustering of single cell transcriptional profiles

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5962608

destiny: diffusion maps for large-scale single-cell data in R.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5962608

ZIFA: Dimensionality reduction for zero-inflated single-cell gene expression analysis

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5962608

Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5962608

Droplet barcoding for single-cell transcriptomics applied to embryonic stem cells.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5962608

G&T-seq: parallel sequencing of single-cell genomes and transcriptomes

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5962608

Measurement of mRNA abundance using RNA-seq data: RPKM measure is inconsistent among samples

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5962608

Single-cell mass cytometry of differential immune and drug responses across a human hematopoietic continuum

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5962608

Tumour evolution inferred by single-cell sequencing

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5962608

Single-cell profiling of the developing mouse brain and spinal cord with split-pool barcoding.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5962608

Comprehensive Classification of Retinal Bipolar Neurons by Single-Cell Transcriptomics

12 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5962608

Data-Driven Phenotypic Dissection of AML Reveals Progenitor-like Cells that Correlate with Prognosis

12 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5962608

Computational and analytical challenges in single-cell transcriptomics

12 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5962608

Computational analysis of cell-to-cell heterogeneity in single-cell RNA-sequencing data reveals hidden subpopulations of cells

12 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5962608

Single-cell RNA-seq highlights intratumoral heterogeneity in primary glioblastoma

12 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5962608

The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells

12 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5962608

Massively parallel single-cell RNA-seq for marker-free decomposition of tissues into cell types

12 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5962608

Full-length RNA-seq from single cells using Smart-seq2.

12 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5962608

Quantitative single-cell RNA-seq with unique molecular identifiers

12 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5962608

viSNE enables visualization of high dimensional single-cell data and reveals phenotypic heterogeneity of leukemia

12 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5962608

12 August 2018

1 reference

https://api.crossref.org/works/10.1038%2FS41467-018-04368-5

7 January 2021

Slingshot: Cell lineage and pseudotime inference for single-cell transcriptomics

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FS41467-018-04368-5

7 January 2021

How to Use t-SNE Effectively

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FS41467-018-04368-5

7 January 2021

On Information and Sufficiency

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FS41467-018-04368-5

7 January 2021

10.1038/S41467-018-04368-5

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29784946%20AND%20SRC:MED&resulttype=core&format=json

Dimensions Publication ID

27 March 2020

ADS bibcode

2018NatCo...9.2002D

0 references

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29784946%20AND%20SRC:MED&resulttype=core&format=json

27 March 2020

PubMed publication ID

29784946

1 reference