(Q92173455)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31110316%20AND%20SRC:MED&resulttype=core&format=json

27 April 2020

title

Tubular cell and keratinocyte single-cell transcriptomics applied to lupus nephritis reveal type I IFN and fibrosis relevant pathways (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31110316%20AND%20SRC:MED&resulttype=core&format=json

single cell transcriptomics

27 April 2020

main subject

1 reference

A curated database reveals trends in single-cell transcriptomics

https://www.nxn.se/single-cell-studies/data.tsv

7 February 2021

1 reference

1 reference

corrigendum / erratum

Author Correction: Tubular cell and keratinocyte single-cell transcriptomics applied to lupus nephritis reveal type I IFN and fibrosis relevant pathways

0 references

author

Peter Izmirly

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31110316%20AND%20SRC:MED&resulttype=core&format=json

27 April 2020

Howard Belmont

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31110316%20AND%20SRC:MED&resulttype=core&format=json

27 April 2020

Jay A. Graham

13

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31110316%20AND%20SRC:MED&resulttype=core&format=json

27 April 2020

James Pullman

19

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31110316%20AND%20SRC:MED&resulttype=core&format=json

27 April 2020

Kamil Slowikowski

20

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31110316%20AND%20SRC:MED&resulttype=core&format=json

27 April 2020

Soumya Raychaudhuri

21

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31110316%20AND%20SRC:MED&resulttype=core&format=json

27 April 2020

Joel M Guthridge

22

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31110316%20AND%20SRC:MED&resulttype=core&format=json

27 April 2020

Jill P Buyon

24

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31110316%20AND%20SRC:MED&resulttype=core&format=json

27 April 2020

Thomas Tuschl

25

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31110316%20AND%20SRC:MED&resulttype=core&format=json

27 April 2020

Chaim Putterman

26

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31110316%20AND%20SRC:MED&resulttype=core&format=json

27 April 2020

3

Pavel Morozov

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31110316%20AND%20SRC:MED&resulttype=core&format=json

27 April 2020

1

Evan Der

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31110316%20AND%20SRC:MED&resulttype=core&format=json

27 April 2020

6

Saritha Ranabothu

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31110316%20AND%20SRC:MED&resulttype=core&format=json

27 April 2020

2

Hemant Suryawanshi

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31110316%20AND%20SRC:MED&resulttype=core&format=json

27 April 2020

4

Manjunath Kustagi

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31110316%20AND%20SRC:MED&resulttype=core&format=json

27 April 2020

15

Nicole Bornkamp

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31110316%20AND%20SRC:MED&resulttype=core&format=json

27 April 2020

5

Beatrice Goilav

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31110316%20AND%20SRC:MED&resulttype=core&format=json

27 April 2020

10

Mordecai Koenigsberg

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31110316%20AND%20SRC:MED&resulttype=core&format=json

27 April 2020

11

Michele Mokrzycki

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31110316%20AND%20SRC:MED&resulttype=core&format=json

27 April 2020

12

Helen Rominieki

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31110316%20AND%20SRC:MED&resulttype=core&format=json

Juan Carlos Rocca Cardenas

27 April 2020

14

object named as

Juan P Rocca

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31110316%20AND%20SRC:MED&resulttype=core&format=json

27 April 2020

17

Emma Schulte

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31110316%20AND%20SRC:MED&resulttype=core&format=json

Accelerating Medicines Partnership Rheumatoid Arthritis and Systemic Lupus Erythematosus (AMP RA/SLE) Consortium

27 April 2020

27

object named as

Accelerating Medicines Partnership Rheumatoid Arthritis and Systemic Lupus Erythematosus (AMP RA/SLE) Consortium

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31110316%20AND%20SRC:MED&resulttype=core&format=json

27 April 2020

author name string

Robert Clancy

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31110316%20AND%20SRC:MED&resulttype=core&format=json

27 April 2020

Nicole Jordan

16

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31110316%20AND%20SRC:MED&resulttype=core&format=json

27 April 2020

Ming Wu

18

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31110316%20AND%20SRC:MED&resulttype=core&format=json

27 April 2020

Judith James

23

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31110316%20AND%20SRC:MED&resulttype=core&format=json

27 April 2020

publication date

20 May 2019

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31110316%20AND%20SRC:MED&resulttype=core&format=json

27 April 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31110316%20AND%20SRC:MED&resulttype=core&format=json

27 April 2020

volume

20

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31110316%20AND%20SRC:MED&resulttype=core&format=json

27 April 2020

issue

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31110316%20AND%20SRC:MED&resulttype=core&format=json

27 April 2020

page(s)

915-927

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31110316%20AND%20SRC:MED&resulttype=core&format=json

describes a project that uses

27 April 2020

kidney

1 reference

A curated database reveals trends in single-cell transcriptomics

7 February 2021

https://www.nxn.se/single-cell-studies/data.tsv

cites work

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1 reference

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Single cell RNA sequencing of human liver reveals distinct intrahepatic macrophage populations

23 February 2021

1 reference

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Ultrahigh thermal conductivity confirmed in boron arsenide

23 February 2021

1 reference

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Single-cell transcriptomics of the mouse kidney reveals potential cellular targets of kidney disease.

23 February 2021

1 reference

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Single-cell RNA-seq of rheumatoid arthritis synovial tissue using low-cost microfluidic instrumentation.

23 February 2021

1 reference

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23 February 2021

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FGF23 is synthesised locally by renal tubules and activates injury-primed fibroblasts

23 February 2021

1 reference

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Single-Cell RNA Sequencing: Unraveling the Brain One Cell at a Time.

23 February 2021

1 reference

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Single cell RNA sequencing to dissect the molecular heterogeneity in lupus nephritis.

23 February 2021

1 reference

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Single-cell transcriptomics of the human placenta: inferring the cell communication network of the maternal-fetal interface

23 February 2021

1 reference

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KEGG: new perspectives on genomes, pathways, diseases and drugs

23 February 2021

1 reference

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Molecular imaging of the kidney in lupus nephritis to characterize response to treatment.

23 February 2021

1 reference

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Enrichr: a comprehensive gene set enrichment analysis web server 2016 update

23 February 2021

1 reference

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Application of single-cell RNA sequencing in optimizing a combinatorial therapeutic strategy in metastatic renal cell carcinoma.

23 February 2021

1 reference

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KEGG as a reference resource for gene and protein annotation

23 February 2021

1 reference

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Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6584054

Local synthesis of interferon-alpha in lupus nephritis is associated with type I interferons signature and LMP7 induction in renal tubular epithelial cells.

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6584054

Biomarkers in lupus nephritis

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6584054

Spatial reconstruction of single-cell gene expression data

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6584054

Genetics and pathogenesis of systemic lupus erythematosus and lupus nephritis

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6584054

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6584054

Molecular mechanisms of epithelial-mesenchymal transition

23 February 2021

1 reference

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Excessive activation of the alternative complement pathway in autosomal dominant polycystic kidney disease.

23 February 2021

1 reference

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The Reactome pathway knowledgebase

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6584054

featureCounts: an efficient general purpose program for assigning sequence reads to genomic features

23 February 2021

1 reference

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Interstitial inflammation and long-term renal outcomes in lupus nephritis.

23 February 2021

1 reference

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Enrichr: interactive and collaborative HTML5 gene list enrichment analysis tool

23 February 2021

1 reference

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STAR: ultrafast universal RNA-seq aligner

23 February 2021

1 reference

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Systemic lupus erythematosus.

23 February 2021

1 reference

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Type I interferon and systemic lupus erythematosus

23 February 2021

1 reference

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Fibroblasts and myofibroblasts in renal fibrosis

23 February 2021

1 reference

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The lupus band test in systemic lupus erythematosus patients.

23 February 2021

1 reference

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Predicting outcomes of lupus nephritis with tubulointerstitial inflammation and scarring

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6584054

Tubulointerstitial lesions of patients with lupus nephritis classified by the 2003 International Society of Nephrology and Renal Pathology Society system.

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6584054

Integrative urinary peptidomics in renal transplantation identifies biomarkers for acute rejection

23 February 2021

1 reference

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TIMP-1 promotes age-related renal fibrosis through upregulating ICAM-1 in human TIMP-1 transgenic mice

23 February 2021

1 reference

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The classification of glomerulonephritis in systemic lupus erythematosus revisited

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6584054

MLANA/MART1 and SILV/PMEL17/GP100 are transcriptionally regulated by MITF in melanocytes and melanoma

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6584054

Tubular epithelial-myofibroblast transdifferentiation mechanisms in proximal tubule cells

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6584054

Blockage of tubular epithelial to myofibroblast transition by hepatocyte growth factor prevents renal interstitial fibrosis

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6584054

Dermcidin: a novel human antibiotic peptide secreted by sweat glands

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6584054

Dissection of key events in tubular epithelial to myofibroblast transition and its implications in renal interstitial fibrosis

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6584054

Basic fibroblast growth factor expression is increased in human renal fibrogenesis and may mediate autocrine fibroblast proliferation

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6584054

KEGG: kyoto encyclopedia of genes and genomes

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6584054

Tubular epithelial-myofibroblast transdifferentiation in progressive tubulointerstitial fibrosis in 5/6 nephrectomized rats.

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6584054

Renal tubular hypertrophy induced by angiotensin II.

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6584054

Predicting renal outcomes in severe lupus nephritis: contributions of clinical and histologic data

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6584054

Cutadapt removes adapter sequences from high-throughput sequencing reads

23 February 2021

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FS41590-019-0386-1

inferred from DOI database lookup

7 January 2021

based on heuristic

Identifiers

DOI

10.1038/S41590-019-0386-1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31110316%20AND%20SRC:MED&resulttype=core&format=json

27 April 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31110316%20AND%20SRC:MED&resulttype=core&format=json

27 April 2020

1 reference