(Q92528002)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31919449%20AND%20SRC:MED&resulttype=core&format=json

30 April 2020

title

SWeeP: representing large biological sequences datasets in compact vectors (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31919449%20AND%20SRC:MED&resulttype=core&format=json

30 April 2020

1 reference

0 references

Camilla Reginatto De Pierri

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31919449%20AND%20SRC:MED&resulttype=core&format=json

30 April 2020

Roberto Tadeu Raittz

13

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31919449%20AND%20SRC:MED&resulttype=core&format=json

Jeroniza Nunes Marchaukoski

30 April 2020

8

object named as

Jeroniza Nunes Marchaukoski

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31919449%20AND%20SRC:MED&resulttype=core&format=json

Fábio de Oliveira Pedrosa

30 April 2020

12

object named as

Fabio O Pedrosa

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31919449%20AND%20SRC:MED&resulttype=core&format=json

30 April 2020

author name string

Ricardo Voyceik

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31919449%20AND%20SRC:MED&resulttype=core&format=json

30 April 2020

Letícia Graziela Costa Santos de Mattos

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31919449%20AND%20SRC:MED&resulttype=core&format=json

30 April 2020

Mariane Gonçalves Kulik

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31919449%20AND%20SRC:MED&resulttype=core&format=json

30 April 2020

Josué Oliveira Camargo

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31919449%20AND%20SRC:MED&resulttype=core&format=json

30 April 2020

Aryel Marlus Repula de Oliveira

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31919449%20AND%20SRC:MED&resulttype=core&format=json

30 April 2020

Bruno Thiago de Lima Nichio

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31919449%20AND%20SRC:MED&resulttype=core&format=json

30 April 2020

Antonio Camilo da Silva Filho

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31919449%20AND%20SRC:MED&resulttype=core&format=json

30 April 2020

Dieval Guizelini

10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31919449%20AND%20SRC:MED&resulttype=core&format=json

30 April 2020

J Miguel Ortega

11

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31919449%20AND%20SRC:MED&resulttype=core&format=json

30 April 2020

publication date

9 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31919449%20AND%20SRC:MED&resulttype=core&format=json

30 April 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31919449%20AND%20SRC:MED&resulttype=core&format=json

30 April 2020

volume

10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31919449%20AND%20SRC:MED&resulttype=core&format=json

30 April 2020

issue

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31919449%20AND%20SRC:MED&resulttype=core&format=json

30 April 2020

page(s)

91

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31919449%20AND%20SRC:MED&resulttype=core&format=json

Reconstructing the phylogeny of New World monkeys (Platyrrhini): evidence from multiple non-coding loci

30 April 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6952362

Prot-SpaM: Fast alignment-free phylogeny reconstruction based on whole-proteome sequences

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6952362

A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6952362

Alignment-free sequence comparison: benefits, applications, and tools.

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6952362

A novel fast vector method for genetic sequence comparison

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6952362

Clustal Omega for making accurate alignments of many protein sequences.

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6952362

A greedy alignment-free distance estimator for phylogenetic inference

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6952362

Viral Phylogenomics Using an Alignment-Free Method: A Three-Step Approach to Determine Optimal Length of k-mer

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6952362

Phylogenetic tree construction using trinucleotide usage profile (TUP).

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6952362

A new view of the tree of life

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6952362

Continuous Distributed Representation of Biological Sequences for Deep Proteomics and Genomics

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6952362

Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6952362

A coverage criterion for spaced seeds and its applications to support vector machine string kernels and k-mer distances

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6952362

Spaced words and kmacs: fast alignment-free sequence comparison based on inexact word matches

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6952362

Kmacs: the k-mismatch average common substring approach to alignment-free sequence comparison

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6952362

Editorial: Alignment-free methods in computational biology

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6952362

Fast alignment-free sequence comparison using spaced-word frequencies.

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6952362

Primate phylogenetic relationships and divergence dates inferred from complete mitochondrial genomes

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6952362

Alignment-free phylogenetics and population genetics

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6952362

Phylogeny of bacterial and archaeal genomes using conserved genes: supertrees and supermatrices

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6952362

Dendroscope 3: an interactive tool for rooted phylogenetic trees and networks

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6952362

Whole-proteome phylogeny of prokaryotes by feature frequency profiles: An alignment-free method with optimal feature resolution

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6952362

Estimating the phylogeny and divergence times of primates using a supermatrix approach

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6952362

Whole-proteome phylogeny of large dsDNA virus families by an alignment-free method

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6952362

Alignment-free genome comparison with feature frequency profiles (FFP) and optimal resolutions

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6952362

NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6952362

Phylogenetic relationships and divergence times among New World monkeys (Platyrrhini, Primates).

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6952362

Principal eigenvector of contact matrices and hydrophobicity profiles in proteins

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6952362

What is dynamic programming?

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6952362

A new sequence distance measure for phylogenetic tree construction

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6952362

Alignment-free sequence comparison-a review

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6952362

PatternHunter: faster and more sensitive homology search

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6952362

Basic local alignment search tool

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6952362

Ror2 signaling regulates Golgi structure and transport through IFT20 for tumor invasiveness

11 February 2021

1 reference

https://api.crossref.org/works/10.1038%2FS41598-019-55627-4

7 January 2021

CoeViz: a web-based tool for coevolution analysis of protein residues.

1 reference

https://api.crossref.org/works/10.1038%2FS41598-019-55627-4

7 January 2021

Extensions of Lipschitz mappings into a Hilbert space

1 reference

https://api.crossref.org/works/10.1038%2FS41598-019-55627-4

7 January 2021

Amylases in the Human Vagina

1 reference

https://api.crossref.org/works/10.1038%2FS41598-019-55627-4

7 January 2021

The WEKA data mining software: an update

1 reference

https://api.crossref.org/works/10.1038%2FS41598-019-55627-4

7 January 2021

10.1038/S41598-019-55627-4

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31919449%20AND%20SRC:MED&resulttype=core&format=json

30 April 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31919449%20AND%20SRC:MED&resulttype=core&format=json

30 April 2020

1 reference