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Getting the Entire Message: Progress in Isoform Sequencing
scientific article published on 16 August 2019
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Europe PubMed Central
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6706457
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Getting the Entire Message: Progress in Isoform Sequencing
(English)
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Europe PubMed Central
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6706457
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31475029%20AND%20SRC:MED&resulttype=core&format=json
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Paul Flicek
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3
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6706457
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3 May 2020
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Simon A Hardwick
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1
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Anoushka Joglekar
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Adam Frankish
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4
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Hagen U Tilgner
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5
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16 August 2019
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3 May 2020
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Frontiers in Genetics
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16 August 2019
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A single-molecule long-read survey of the human transcriptome
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6706457
retrieved
11 February 2021
Single-cell transcriptomics reveals bimodality in expression and splicing in immune cells
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6706457
retrieved
11 February 2021
Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6706457
retrieved
11 February 2021
Accurate identification and analysis of human mRNA isoforms using deep long read sequencing
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6706457
retrieved
11 February 2021
STAR: ultrafast universal RNA-seq aligner
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6706457
retrieved
11 February 2021
Improving PacBio long read accuracy by short read alignment
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6706457
retrieved
11 February 2021
Mapping single molecule sequencing reads using basic local alignment with successive refinement (BLASR): application and theory
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6706457
retrieved
11 February 2021
The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6706457
retrieved
11 February 2021
GENCODE: the reference human genome annotation for The ENCODE Project
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6706457
retrieved
11 February 2021
Deep sequencing of subcellular RNA fractions shows splicing to be predominantly co-transcriptional in the human genome but inefficient for lncRNAs
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6706457
retrieved
11 February 2021
Hybrid error correction and de novo assembly of single-molecule sequencing reads
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6706457
retrieved
11 February 2021
Comprehensive analysis of mRNA methylation reveals enrichment in 3' UTRs and near stop codons
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6706457
retrieved
11 February 2021
Topology of the human and mouse m6A RNA methylomes revealed by m6A-seq
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6706457
retrieved
11 February 2021
Nascent-seq indicates widespread cotranscriptional pre-mRNA splicing in Drosophila
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6706457
retrieved
11 February 2021
Total RNA sequencing reveals nascent transcription and widespread co-transcriptional splicing in the human brain
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6706457
retrieved
11 February 2021
A flexible and efficient template format for circular consensus sequencing and SNP detection
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6706457
retrieved
11 February 2021
Direct RNA sequencing
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6706457
retrieved
11 February 2021
Real-time DNA sequencing from single polymerase molecules
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6706457
retrieved
11 February 2021
Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6706457
retrieved
11 February 2021
Alternative isoform regulation in human tissue transcriptomes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6706457
retrieved
11 February 2021
A global view of gene activity and alternative splicing by deep sequencing of the human transcriptome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6706457
retrieved
11 February 2021
Proliferating cells express mRNAs with shortened 3' untranslated regions and fewer microRNA target sites
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6706457
retrieved
11 February 2021
Mapping and quantifying mammalian transcriptomes by RNA-Seq
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6706457
retrieved
11 February 2021
Dynamic repertoire of a eukaryotic transcriptome surveyed at single-nucleotide resolution
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6706457
retrieved
11 February 2021
The transcriptional landscape of the yeast genome defined by RNA sequencing
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6706457
retrieved
11 February 2021
Functional coordination of alternative splicing in the mammalian central nervous system
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6706457
retrieved
11 February 2021
Widespread mRNA polyadenylation events in introns indicate dynamic interplay between polyadenylation and splicing
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6706457
retrieved
11 February 2021
GENCODE: producing a reference annotation for ENCODE
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6706457
retrieved
11 February 2021
The External RNA Controls Consortium: a progress report.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6706457
retrieved
11 February 2021
A polar mechanism coordinates different regions of alternative splicing within a single gene.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6706457
retrieved
11 February 2021
GMAP: a genomic mapping and alignment program for mRNA and EST sequences
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6706457
retrieved
11 February 2021
Genome-wide survey of human alternative pre-mRNA splicing with exon junction microarrays
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6706457
retrieved
11 February 2021
Genome-wide detection of alternative splicing in expressed sequences of human genes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6706457
retrieved
11 February 2021
Functional association between promoter structure and transcript alternative splicing.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6706457
retrieved
11 February 2021
Protection from Fas-mediated apoptosis by a soluble form of the Fas molecule
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6706457
retrieved
11 February 2021
A muscle-type tropomyosin in human fibroblasts: evidence for expression by an alternative RNA splicing mechanism
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6706457
retrieved
11 February 2021
Splice site selection, rate of splicing, and alternative splicing on nascent transcripts
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6706457
retrieved
11 February 2021
Nonmuscle and muscle tropomyosin isoforms are expressed from a single gene by alternative RNA splicing and polyadenylation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6706457
retrieved
11 February 2021
Identifiers
DOI
10.3389/FGENE.2019.00709
1 reference
stated in
Europe PubMed Central
PMCID
6706457
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31475029%20AND%20SRC:MED&resulttype=core&format=json
retrieved
3 May 2020
PMCID
6706457
1 reference
stated in
Europe PubMed Central
PMCID
6706457
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31475029%20AND%20SRC:MED&resulttype=core&format=json
retrieved
3 May 2020
PubMed ID
31475029
1 reference
stated in
Europe PubMed Central
PMCID
6706457
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31475029%20AND%20SRC:MED&resulttype=core&format=json
retrieved
3 May 2020
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