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Piercing the dark matter: bioinformatics of long-range sequencing and mapping.
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Europe PubMed Central
PubMed publication ID
29599501
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29599501%20AND%20SRC:MED&resulttype=core&format=json
retrieved
21 March 2020
title
Piercing the dark matter: bioinformatics of long-range sequencing and mapping
(English)
1 reference
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Europe PubMed Central
PubMed publication ID
29599501
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29599501%20AND%20SRC:MED&resulttype=core&format=json
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21 March 2020
main subject
molecular biology
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dark matter
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bioinformatics
1 reference
based on heuristic
inferred from title
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Fritz Sedlazeck
series ordinal
1
1 reference
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Europe PubMed Central
PubMed publication ID
29599501
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29599501%20AND%20SRC:MED&resulttype=core&format=json
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21 March 2020
Hayan Lee
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2
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Europe PubMed Central
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29599501
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21 March 2020
Charlotte A Darby
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3
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Europe PubMed Central
PubMed publication ID
29599501
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21 March 2020
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Michael C Schatz
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4
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29599501
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21 March 2020
publication date
1 June 2018
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29599501
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21 March 2020
full work available at URL
https://www.nature.com/articles/s41576-018-0003-4.epdf?shared_access_token=vdHXUTyjnGOoExz7gjmkdNRgN0jAjWel9jnR3ZoTv0NTo-Q385yhHW66EtdyCK7ygwYzF61Cqv9HnGFpL-5awMz7k9hOZaf4QM0Q0xC-FgGCuJ6pMU_xm2riYNes5yXb5hZIyfflsuz9xirEsJj6d98vH89znp9mNgBcWLxVHxw%3D
0 references
published in
Nature Reviews Genetics
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Europe PubMed Central
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29599501
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retrieved
21 March 2020
volume
19
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Europe PubMed Central
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29599501
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21 March 2020
issue
6
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Europe PubMed Central
PubMed publication ID
29599501
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29599501%20AND%20SRC:MED&resulttype=core&format=json
retrieved
21 March 2020
page(s)
329-346
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Europe PubMed Central
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29599501
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29599501%20AND%20SRC:MED&resulttype=core&format=json
retrieved
21 March 2020
exact match
https://scigraph.springernature.com/pub.10.1038/s41576-018-0003-4
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7 January 2021
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7 January 2021
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1 reference
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7 January 2021
based on heuristic
inferred from DOI database lookup
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inferred from DOI database lookup
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7 January 2021
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inferred from DOI database lookup
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1 reference
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inferred from DOI database lookup
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inferred from DOI database lookup
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inferred from DOI database lookup
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inferred from DOI database lookup
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7 January 2021
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inferred from DOI database lookup
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inferred from DOI database lookup
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7 January 2021
based on heuristic
inferred from DOI database lookup
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7 January 2021
based on heuristic
inferred from DOI database lookup
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1 reference
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7 January 2021
based on heuristic
inferred from DOI database lookup
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7 January 2021
based on heuristic
inferred from DOI database lookup
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Crossref
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7 January 2021
based on heuristic
inferred from DOI database lookup
Assembly of specific SR protein complexes on distinct regulatory elements of the Drosophila doublesex splicing enhancer
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41576-018-0003-4
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41576-018-0003-4
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
GENCODE: the reference human genome annotation for The ENCODE Project
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41576-018-0003-4
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
RNA-Seq: a revolutionary tool for transcriptomics
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41576-018-0003-4
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
A survey of best practices for RNA-seq data analysis
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41576-018-0003-4
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
A survey of the sorghum transcriptome using single-molecule long reads
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41576-018-0003-4
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Nanopore long-read RNAseq reveals widespread transcriptional variation among the surface receptors of individual B cells.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41576-018-0003-4
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Highly parallel direct RNA sequencing on an array of nanopores.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41576-018-0003-4
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Comprehensive transcriptome analysis using synthetic long-read sequencing reveals molecular co-association of distant splicing events
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41576-018-0003-4
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Unveiling the complexity of the maize transcriptome by single-molecule long-read sequencing
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41576-018-0003-4
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Widespread Polycistronic Transcripts in Fungi Revealed by Single-Molecule mRNA Sequencing
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41576-018-0003-4
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
SQANTI: extensive characterization of long-read transcript sequences for quality control in full-length transcriptome identification and quantification.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41576-018-0003-4
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Characterization of the human ESC transcriptome by hybrid sequencing
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41576-018-0003-4
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
IDP-ASE: haplotyping and quantifying allele-specific expression at the gene and gene isoform level by hybrid sequencing
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41576-018-0003-4
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Massively parallel digital transcriptional profiling of single cells
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41576-018-0003-4
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Finding the fifth base: genome-wide sequencing of cytosine methylation.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41576-018-0003-4
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Advanced methylome analysis after bisulfite deep sequencing: an example in Arabidopsis.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41576-018-0003-4
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Direct detection of DNA methylation during single-molecule, real-time sequencing
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41576-018-0003-4
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Genome-wide mapping of methylated adenine residues in pathogenic Escherichia coli using single-molecule real-time sequencing
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41576-018-0003-4
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
DNA Methylation on N6-Adenine in C. elegans
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41576-018-0003-4
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Taxonomic structure and functional association of foxtail millet root microbiome.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41576-018-0003-4
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Resolving the Complexity of Human Skin Metagenomes Using Single-Molecule Sequencing.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41576-018-0003-4
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Species-level deconvolution of metagenome assemblies with Hi-C-based contact probability maps
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41576-018-0003-4
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Extending reference assembly models
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41576-018-0003-4
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
The MHC locus and genetic susceptibility to autoimmune and infectious diseases
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41576-018-0003-4
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
HLA Typing for the Next Generation
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41576-018-0003-4
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
The novel HLA-B*44 allele, HLA-B*44:220, identified by Single Molecule Real-Time DNA sequencing in a British Caucasoid male.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41576-018-0003-4
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
PacBio-LITS: a large-insert targeted sequencing method for characterization of human disease-associated chromosomal structural variations
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41576-018-0003-4
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Real-time, portable genome sequencing for Ebola surveillance
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41576-018-0003-4
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Mobile real-time surveillance of Zika virus in Brazil
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41576-018-0003-4
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
The rise of a digital immune system
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41576-018-0003-4
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Diagnostic clinical genome and exome sequencing
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41576-018-0003-4
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
A reference data set of 5.4 million phased human variants validated by genetic inheritance from sequencing a three-generation 17-member pedigree
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41576-018-0003-4
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Nanopore sequencing meets epigenetics.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41576-018-0003-4
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
HINGE: long-read assembly achieves optimal repeat resolution
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41576-018-0003-4
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
MECAT: fast mapping, error correction, and de novo assembly for single-molecule sequencing reads
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41576-018-0003-4
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Assembly of long error-prone reads using de Bruijn graphs
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41576-018-0003-4
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
LINKS: Scalable, alignment-free scaffolding of draft genomes with long reads.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41576-018-0003-4
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Scaffolding and completing genome assemblies in real-time with nanopore sequencing
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41576-018-0003-4
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Fast and accurate de novo genome assembly from long uncorrected reads.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41576-018-0003-4
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Fast and sensitive mapping of nanopore sequencing reads with GraphMap
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41576-018-0003-4
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Kart: a divide-and-conquer algorithm for NGS read alignment
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41576-018-0003-4
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
LAMSA: fast split read alignment with long approximate matches
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41576-018-0003-4
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Identifying structural variants using linked-read sequencing data
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41576-018-0003-4
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
WhatsHap: Weighted Haplotype Assembly for Future-Generation Sequencing Reads.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41576-018-0003-4
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
BLAT—The BLAST-Like Alignment Tool
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41576-018-0003-4
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
GMAP: a genomic mapping and alignment program for mRNA and EST sequences
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41576-018-0003-4
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
RAILS and Cobbler: Scaffolding and automated finishing of draft genomes using long DNA sequences
1 reference
stated in
COCI
retrieved
20 August 2022
reference URL
https://opencitations.net/index/coci/api/v1/citations/10.21105/JOSS.00116
Identifiers
DOI
10.1038/S41576-018-0003-4
1 reference
stated in
Europe PubMed Central
PubMed publication ID
29599501
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29599501%20AND%20SRC:MED&resulttype=core&format=json
retrieved
21 March 2020
PubMed publication ID
29599501
1 reference
stated in
Europe PubMed Central
PubMed publication ID
29599501
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29599501%20AND%20SRC:MED&resulttype=core&format=json
retrieved
21 March 2020
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