(Q37660635)

21 August 2017

Scaffolding and completing genome assemblies in real-time with nanopore sequencing (English)

1 reference

21 August 2017

6

1 reference

21 August 2017

3

Devika Ganesamoorthy

1 reference

21 August 2017

Son Hoang Nguyen

2

0 references

Alysha G. Elliott

object named as

Alysha G Elliott

series ordinal

4

0 references

Minh Duc Cao

object named as

Minh Duc Cao

series ordinal

1

0 references

author name string

Matthew A Cooper

series ordinal

5

1 reference

PMCID

5321748

21 August 2017

language of work or name

English

0 references

publication date

20 February 2017

1 reference

21 August 2017

Nature Communications

1 reference

21 August 2017

8

1 reference

21 August 2017

14515

1 reference

Creative Commons Attribution 4.0 International

21 August 2017

start time

20 February 2017

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

exact match

https://scigraph.springernature.com/pub.10.1038/ncomms14515

0 references

cites work

Nanocall: an open source basecaller for Oxford Nanopore sequencing data.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5321748

Streaming algorithms for identification of pathogens and antibiotic resistance potential from real-time MinION(TM) sequencing

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5321748

Realtime analysis and visualization of MinION sequencing data with npReader.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5321748

Oxford Nanopore sequencing, hybrid error correction, and de novo assembly of a eukaryotic genome

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5321748

LINKS: Scalable, alignment-free scaffolding of draft genomes with long reads.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5321748

Scaffolding of a bacterial genome using MinION nanopore sequencing

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5321748

A complete bacterial genome assembled de novo using only nanopore sequencing data

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5321748

Assembling large genomes with single-molecule sequencing and locality-sensitive hashing

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5321748

Genome assembly using Nanopore-guided long and error-free DNA reads

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5321748

Improved data analysis for the MinION nanopore sequencer

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5321748

One chromosome, one contig: complete microbial genomes from long-read sequencing and assembly

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5321748

Pilon: an integrated tool for comprehensive microbial variant detection and genome assembly improvement

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5321748

A reference bacterial genome dataset generated on the MinION™ portable single-molecule nanopore sequencer.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5321748

Poretools: a toolkit for analyzing nanopore sequence data

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5321748

SSPACE-LongRead: scaffolding bacterial draft genomes using long read sequence information

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5321748

Resistance determinants and mobile genetic elements of an NDM-1-encoding Klebsiella pneumoniae strain

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5321748

In silico detection and typing of plasmids using PlasmidFinder and plasmid multilocus sequence typing

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5321748

Trimmomatic: a flexible trimmer for Illumina sequence data

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5321748

Prokka: rapid prokaryotic genome annotation

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5321748

Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5321748

Hybrid error correction and de novo assembly of single-molecule sequencing reads

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5321748

A hybrid approach for the automated finishing of bacterial genomes

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5321748

SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5321748

Repetitive DNA and next-generation sequencing: computational challenges and solutions

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5321748

PHAST: a fast phage search tool

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5321748

Detecting genomic islands using bioinformatics approaches

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5321748

Single-nucleotide discrimination in immobilized DNA oligonucleotides with a biological nanopore

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5321748

The potential and challenges of nanopore sequencing

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5321748

Velvet: algorithms for de novo short read assembly using de Bruijn graphs

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5321748

Islander: a database of integrative islands in prokaryotic genomes, the associated integrases and their DNA site specificities

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5321748

A whole-genome assembly of Drosophila

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5321748

Characterization of individual polynucleotide molecules using a membrane channel

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5321748

Minimap and miniasm: fast mapping and de novo assembly for noisy long sequences

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5321748

QUAST: quality assessment tool for genome assemblies

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5321748

MinION nanopore sequencing identifies the position and structure of a bacterial antibiotic resistance island

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5321748

Identification of acquired antimicrobial resistance genes

25 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5321748

de novo assembly and population genomic survey of natural yeast isolates with the Oxford Nanopore MinION sequencer

25 June 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FNCOMMS14515

7 January 2021

inferred from DOI database lookup

DeepNano: Deep recurrent neural networks for base calling in MinION nanopore reads.

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FNCOMMS14515

7 January 2021

inferred from DOI database lookup

On the shortest spanning subtree of a graph and the traveling salesman problem

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FNCOMMS14515

7 January 2021

inferred from DOI database lookup

de novo assembly and population genomic survey of natural yeast isolates with the Oxford Nanopore MinION sequencer

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/28218240

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1038/NCOMMS14515

1 reference

21 August 2017

0 references

1 reference

21 August 2017

1 reference

PMCID

5321748