(Q93270930)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:32341564%20AND%20SRC:MED&resulttype=core&format=json

4 May 2020

title

A complete domain-to-species taxonomy for Bacteria and Archaea (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:32341564%20AND%20SRC:MED&resulttype=core&format=json

Author Correction: A complete domain-to-species taxonomy for Bacteria and Archaea

4 May 2020

main subject

Archaea

0 references

corrigendum / erratum

0 references

author

Donovan H Parks

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:32341564%20AND%20SRC:MED&resulttype=core&format=json

4 May 2020

Christian Rinke

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:32341564%20AND%20SRC:MED&resulttype=core&format=json

4 May 2020

Aaron J Mussig

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:32341564%20AND%20SRC:MED&resulttype=core&format=json

4 May 2020

Philip Hugenholtz

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:32341564%20AND%20SRC:MED&resulttype=core&format=json

4 May 2020

author name string

Maria Chuvochina

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:32341564%20AND%20SRC:MED&resulttype=core&format=json

4 May 2020

Pierre-Alain Chaumeil

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:32341564%20AND%20SRC:MED&resulttype=core&format=json

4 May 2020

publication date

27 April 2020

1 reference

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4 May 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:32341564%20AND%20SRC:MED&resulttype=core&format=json

Genomic encyclopedia of bacteria and archaea: sequencing a myriad of type strains

4 May 2020

cites work

1 reference

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7 January 2021

1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life

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7 January 2021

Recovery of nearly 8,000 metagenome-assembled genomes substantially expands the tree of life.

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7 January 2021

IMG/M v.5.0: an integrated data management and comparative analysis system for microbial genomes and microbiomes

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7 January 2021

Extensive Unexplored Human Microbiome Diversity Revealed by Over 150,000 Genomes from Metagenomes Spanning Age, Geography, and Lifestyle

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7 January 2021

Towards a genome-based taxonomy for prokaryotes

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7 January 2021

Microbial taxonomy in the post-genomic era: rebuilding from scratch?

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7 January 2021

A New Genomics-Driven Taxonomy of Bacteria and Archaea: Are We There Yet?

1 reference

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7 January 2021

A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life

1 reference

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7 January 2021

What are bacterial species?

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7 January 2021

The bacterial species definition in the genomic era.

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7 January 2021

The Bacterial Species Challenge: Making Sense of Genetic and Ecological Diversity

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7 January 2021

Biological species are universal across Life's domains

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7 January 2021

Using average nucleotide identity to improve taxonomic assignments in prokaryotic genomes at the NCBI

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7 January 2021

Proposed minimal standards for the use of genome data for the taxonomy of prokaryotes.

1 reference

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7 January 2021

Genome sequences as the type material for taxonomic descriptions of prokaryotes.

1 reference

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7 January 2021

Genomic insights that advance the species definition for prokaryotes

1 reference

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7 January 2021

Consistent Metagenome-Derived Metrics Verify and Delineate Bacterial Species Boundaries

1 reference

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7 January 2021

Shifting the genomic gold standard for the prokaryotic species definition

1 reference

https://api.crossref.org/works/10.1038%2FS41587-020-0501-8

7 January 2021

Microbial species delineation using whole genome sequences

1 reference

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7 January 2021

A large-scale evaluation of algorithms to calculate average nucleotide identity

1 reference

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7 January 2021

Mash: fast genome and metagenome distance estimation using MinHash

1 reference

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7 January 2021

DNA-DNA hybridization values and their relationship to whole-genome sequence similarities

1 reference

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7 January 2021

The Microbial Genomes Atlas (MiGA) webserver: taxonomic and gene diversity analysis of Archaea and Bacteria at the whole genome level.

1 reference

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7 January 2021

International Code of Nomenclature of Prokaryotes. Prokaryotic Code (2008 Revision)

1 reference

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7 January 2021

A Genus Definition for Bacteria and Archaea Based on a Standard Genome Relatedness Index

1 reference

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7 January 2021

Modest proposals to expand the type material for naming of prokaryotes

1 reference

https://api.crossref.org/works/10.1038%2FS41587-020-0501-8

7 January 2021

Uncultivated microbes in need of their own taxonomy.

1 reference

https://api.crossref.org/works/10.1038%2FS41587-020-0501-8

7 January 2021

The importance of designating type material for uncultured taxa

1 reference

https://api.crossref.org/works/10.1038%2FS41587-020-0501-8

7 January 2021

Assembly: a resource for assembled genomes at NCBI.

1 reference

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7 January 2021

LPSN – List of Prokaryotic names with Standing in Nomenclature (bacterio.net), 20 years on

1 reference

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7 January 2021

BacDive in 2019: bacterial phenotypic data for High-throughput biodiversity analysis

1 reference

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7 January 2021

StrainInfo introduces electronic passports for microorganisms.

1 reference

https://api.crossref.org/works/10.1038%2FS41587-020-0501-8

7 January 2021

Type material in the NCBI Taxonomy Database.

1 reference

https://api.crossref.org/works/10.1038%2FS41587-020-0501-8

7 January 2021

Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation

1 reference

https://api.crossref.org/works/10.1038%2FS41587-020-0501-8

7 January 2021

Brucella taxonomy and evolution

1 reference

https://api.crossref.org/works/10.1038%2FS41587-020-0501-8

7 January 2021

Phylogenomic analysis of the species of the Mycobacterium tuberculosis complex demonstrates that Mycobacterium africanum, Mycobacterium bovis, Mycobacterium caprae, Mycobacterium microti and Mycobacterium pinnipedii are later heterotypic synonyms of

1 reference

https://api.crossref.org/works/10.1038%2FS41587-020-0501-8

7 January 2021

Genome-based reclassification of Bacillus plakortidis Borchert et al. 2007 and Bacillus lehensis Ghosh et al. 2007 as a later heterotypic synonym of Bacillus oshimensis Yumoto et al. 2005; Bacillus rhizosphaerae Madhaiyan et al. 2011 as a later hete

1 reference

https://api.crossref.org/works/10.1038%2FS41587-020-0501-8

7 January 2021

Reclassification of Halomonas caseinilytica Wu et al. 2008 as a later synonym of Halomonas sinaiensis-Comments on the proposal by Hwang et al., Antonie van Leeuwenhoek 109:1345-1352, 2016

1 reference

https://api.crossref.org/works/10.1038%2FS41587-020-0501-8

7 January 2021

Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea.

1 reference

https://api.crossref.org/works/10.1038%2FS41587-020-0501-8

7 January 2021

Historical evolution and current status of the taxonomy of genus Pseudomonas.

1 reference

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7 January 2021

Molecular signatures for Bacillus species: demarcation of the Bacillus subtilis and Bacillus cereus clades in molecular terms and proposal to limit the placement of new species into the genus Bacillus

1 reference

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7 January 2021

Microbial malaise: how can we classify the microbiome?

1 reference

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7 January 2021

International Committee on Systematics of Prokaryotes; Subcommittee on the taxonomy of Brucella: Minutes of the meeting, 17 September 2003, Pamplona, Spain

1 reference

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7 January 2021

Practical problems when incorporating rapidly changing microbial taxonomy into clinical practice

1 reference

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7 January 2021

Escherichia coli in disguise: molecular origins of Shigella

1 reference

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7 January 2021

Fuzzy species revisited

1 reference

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7 January 2021

A new view of the tree of life

1 reference

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7 January 2021

The sequence read archive

1 reference

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7 January 2021

CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes

1 reference

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7 January 2021

Prodigal: prokaryotic gene recognition and translation initiation site identification

1 reference

https://api.crossref.org/works/10.1038%2FS41587-020-0501-8

7 January 2021

Accelerated Profile HMM Searches

1 reference

https://api.crossref.org/works/10.1038%2FS41587-020-0501-8

7 January 2021

FastTree: computing large minimum evolution trees with profiles instead of a distance matrix

1 reference

https://api.crossref.org/works/10.1038%2FS41587-020-0501-8

7 January 2021

An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea

1 reference

https://api.crossref.org/works/10.1038%2FS41587-020-0501-8

7 January 2021

10.1038/S41587-020-0501-8

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:32341564%20AND%20SRC:MED&resulttype=core&format=json

4 May 2020

1 reference