(Q46202632)

PubMed publication ID

28787424

20 December 2017

http://europepmc.org/abstract/MED/28787424

title

Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC6436528&resulttype=core&format=json

Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea.

13 May 2020

corrigendum / erratum

0 references

author

Ramunas Stepanauskas

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC6436528&resulttype=core&format=json

13 May 2020

Susannah G. Tringe

11

1 reference

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13 May 2020

Rob Knight

40

1 reference

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13 May 2020

Tbk Reddy

6

1 reference

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13 May 2020

Frederik Schulz

7

1 reference

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13 May 2020

Jessica Jarett

8

1 reference

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13 May 2020

Adam R Rivers

9

1 reference

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13 May 2020

Mircea Podar

18

1 reference

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13 May 2020

George Weinstock

20

1 reference

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13 May 2020

Shibu Yooseph

23

1 reference

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13 May 2020

Granger G Sutton

24

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13 May 2020

William C. Nelson

27

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC6436528&resulttype=core&format=json

13 May 2020

Sean P Jungbluth

29

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13 May 2020

Brett J Baker

34

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13 May 2020

Thomas Rattei

35

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13 May 2020

Jonathan A. Eisen

36

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC6436528&resulttype=core&format=json

13 May 2020

Gene W. Tyson

44

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13 May 2020

Christian Rinke

45

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13 May 2020

Alla Lapidus

47

1 reference

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13 May 2020

Pelin Yilmaz

49

1 reference

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13 May 2020

Donovan H Parks

50

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13 May 2020

A. Murat Eren

51

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13 May 2020

Jillian Banfield

53

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC6436528&resulttype=core&format=json

13 May 2020

Frank Oliver Glöckner

25

Frank O Glöckner

1 reference

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13 May 2020

13

Alex Copeland

1 reference

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13 May 2020

Jeremy A Dodsworth

22

0 references

Noah Fierer

39

Noah Fierer

1 reference

Konstantinos T. Konstantinidis

13 May 2020

32

Konstantinos T Konstantinidis

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC6436528&resulttype=core&format=json

13 May 2020

52

Lynn Schriml

1 reference

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13 May 2020

Guy Cochrane

42

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Philip Hugenholtz

Philip Hugenholtz

54

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Nikos C. Kyrpides

Nikos C Kyrpides

2

0 references

Peer Bork

19

Peer Bork

1 reference

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13 May 2020

Ilene Karsch-Mizrachi

43

Ilene Karsch-Mizrachi

1 reference

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13 May 2020

26

Jack A Gilbert

1 reference

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13 May 2020

Emiley A Eloe-Fadrosh

10

Emiley A Eloe-Fadrosh

1 reference

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13 May 2020

16

Rex R Malmstrom

1 reference

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13 May 2020

38

Katherine D McMahon

1 reference

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13 May 2020

30

Thijs J G Ettema

1 reference

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13 May 2020

12

Natalia N Ivanova

1 reference

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13 May 2020

21

George M Garrity

1 reference

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13 May 2020

37

Brian Hedlund

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13 May 2020

14

Alicia Clum

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13 May 2020

4

Miranda Harmon-Smith

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13 May 2020

48

Folker Meyer

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13 May 2020

5

Devin Doud

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13 May 2020

17

Bruce Birren

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13 May 2020

31

Scott Tighe

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13 May 2020

41

Rob Finn

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Genome Standards Consortium

13 May 2020

46

Genome Standards Consortium

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC6436528&resulttype=core&format=json

13 May 2020

33

Wen-Tso Liu

1 reference

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13 May 2020

15

Eric D Becraft

1 reference

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13 May 2020

28

Steven J Hallam

1 reference

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13 May 2020

55

Tanja Woyke

1 reference

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13 May 2020

author name string

Robert M Bowers

1

1 reference

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13 May 2020

publication date

1 August 2017

1 reference

PubMed publication ID

28787424

20 December 2017

http://europepmc.org/abstract/MED/28787424

published in

Nature Biotechnology

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC6436528&resulttype=core&format=json

13 May 2020

volume

35

1 reference

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13 May 2020

issue

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC6436528&resulttype=core&format=json

13 May 2020

page(s)

725-731

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC6436528&resulttype=core&format=json

The Uncultured Microbial Majority

13 May 2020

cites work

1 reference

Community structure and metabolism through reconstruction of microbial genomes from the environment

21 January 2018

1 reference

Environmental genome shotgun sequencing of the Sargasso Sea

21 January 2018

1 reference

Single-cell sequencing in its prime

21 January 2018

1 reference

Single cell genomics: an individual look at microbes

21 January 2018

1 reference

The human microbiome project

21 January 2018

1 reference

The Earth Microbiome project: successes and aspirations

21 January 2018

1 reference

A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea

21 January 2018

1 reference

Thousands of microbial genomes shed light on interconnected biogeochemical processes in an aquifer system.

21 January 2018

1 reference

Unusual biology across a group comprising more than 15% of domain Bacteria.

21 January 2018

1 reference

Global metagenomic survey reveals a new bacterial candidate phylum in geothermal springs

21 January 2018

1 reference

Insights into the phylogeny and coding potential of microbial dark matter

21 January 2018

1 reference

The Genomes OnLine Database (GOLD) v.5: a metadata management system based on a four level (meta)genome project classification.

21 January 2018

1 reference

The minimum information about a genome sequence (MIGS) specification

21 January 2018

1 reference

Genomics. Genome project standards in a new era of sequencing

21 January 2018

1 reference

Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications

21 January 2018

1 reference

Minimum Information about a Biosynthetic Gene cluster.

21 January 2018

1 reference

MIxS-BE: a MIxS extension defining a minimum information standard for sequence data from the built environment.

21 January 2018

1 reference

Obtaining genomes from uncultivated environmental microorganisms using FACS-based single-cell genomics

21 January 2018

1 reference

Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes

21 January 2018

1 reference

Community-wide analysis of microbial genome sequence signatures

21 January 2018

1 reference

Microbiology. Genomes from metagenomics.

21 January 2018

1 reference

Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes

21 January 2018

1 reference

Matching phylogeny and metabolism in the uncultured marine bacteria, one cell at a time

21 January 2018

1 reference

Prevalent genome streamlining and latitudinal divergence of planktonic bacteria in the surface ocean

21 January 2018

1 reference

The future is now: single-cell genomics of bacteria and archaea

21 January 2018

1 reference

Comprehensive human genome amplification using multiple displacement amplification

21 January 2018

1 reference

Single-cell genomic sequencing using Multiple Displacement Amplification

21 January 2018

1 reference

A quantitative comparison of single-cell whole genome amplification methods

21 January 2018

1 reference

Multiple displacement amplification compromises quantitative analysis of metagenomes

21 January 2018

1 reference

Mechanism of chimera formation during the Multiple Displacement Amplification reaction

21 January 2018

1 reference

SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing

21 January 2018

1 reference

IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth

21 January 2018

1 reference

Fast identification and removal of sequence contamination from genomic and metagenomic datasets

21 January 2018

1 reference

One bacterial cell, one complete genome

21 January 2018

1 reference

Decontamination of MDA reagents for single cell whole genome amplification

21 January 2018

1 reference

Reconstructing each cell's genome within complex microbial communities-dream or reality?

21 January 2018

1 reference

Anvi'o: an advanced analysis and visualization platform for 'omics data

21 January 2018

1 reference

ProDeGe: a computational protocol for fully automated decontamination of genomes

21 January 2018

1 reference

acdc - Automated Contamination Detection and Confidence estimation for single-cell genome data.

21 January 2018

1 reference

Symbiosis insights through metagenomic analysis of a microbial consortium

21 January 2018

1 reference

Lineages of acidophilic archaea revealed by community genomic analysis

21 January 2018

1 reference

Fermentation, hydrogen, and sulfur metabolism in multiple uncultivated bacterial phyla

21 January 2018

1 reference

Ray Meta: scalable de novo metagenome assembly and profiling.

21 January 2018

1 reference

MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph

21 January 2018

1 reference

metaSPAdes: a new versatile metagenomic assembler

21 January 2018

1 reference

Metagenomic discovery of biomass-degrading genes and genomes from cow rumen

21 January 2018

1 reference

Classification of metagenomic sequences: methods and challenges

21 January 2018

1 reference

Identification and Resolution of Microdiversity through Metagenomic Sequencing of Parallel Consortia

21 January 2018

1 reference

Time series community genomics analysis reveals rapid shifts in bacterial species, strains, and phage during infant gut colonization

21 January 2018

1 reference

GroopM: an automated tool for the recovery of population genomes from related metagenomes.

21 January 2018

1 reference

MaxBin: an automated binning method to recover individual genomes from metagenomes using an expectation-maximization algorithm

21 January 2018

1 reference

The binning of metagenomic contigs for microbial physiology of mixed cultures

21 January 2018

1 reference

Differential genome evolution between companion symbionts in an insect-bacterial symbiosis

21 January 2018

1 reference

The 160-Kilobase Genome of the Bacterial Endosymbiont Carsonella

21 January 2018

1 reference

Highlight: tiniest of the tiny--a new low for genome size

21 January 2018

1 reference

Genomic sequencing of uncultured microorganisms from single cells

21 January 2018

1 reference

Assembling the marine metagenome, one cell at a time

21 January 2018

1 reference

Methylotrophic methanogenesis discovered in the archaeal phylum Verstraetearchaeota

21 January 2018

1 reference

Community genomics in microbial ecology and evolution

21 January 2018

1 reference

The bacterial species definition in the genomic era.

21 January 2018

1 reference

Central role of the cell in microbial ecology

21 January 2018

1 reference

PhyloSift: phylogenetic analysis of genomes and metagenomes

21 January 2018

1 reference

Phylogenomic analysis of bacterial and archaeal sequences with AMPHORA2.

21 January 2018

1 reference

Accurate and universal delineation of prokaryotic species

21 January 2018

1 reference

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

21 January 2018

1 reference

UGA is an additional glycine codon in uncultured SR1 bacteria from the human microbiota

21 January 2018

1 reference

A simple, fast, and accurate method of phylogenomic inference

21 January 2018

1 reference

Metagenomic species profiling using universal phylogenetic marker genes

21 January 2018

1 reference

rrndb: the Ribosomal RNA Operon Copy Number Database

21 January 2018

1 reference

First genomic insights into members of a candidate bacterial phylum responsible for wastewater bulking.

21 January 2018

1 reference

An expanded genomic representation of the phylum cyanobacteria

21 January 2018

1 reference

Identifying contamination with advanced visualization and analysis practices: metagenomic approaches for eukaryotic genome assemblies

21 January 2018

1 reference

Environmental genomics reveals a single-species ecosystem deep within Earth

21 January 2018

1 reference

The human gut and groundwater harbor non-photosynthetic bacteria belonging to a new candidate phylum sibling to Cyanobacteria

21 January 2018

1 reference

Extraordinary phylogenetic diversity and metabolic versatility in aquifer sediment.

21 January 2018

1 reference

RubisCO of a nucleoside pathway known from Archaea is found in diverse uncultivated phyla in bacteria

21 January 2018

1 reference

Genomic features of a bumble bee symbiont reflect its host environment

21 January 2018

1 reference

A Rickettsiales symbiont of amoebae with ancient features.

21 January 2018

1 reference

Accurate multiplex polony sequencing of an evolved bacterial genome

21 January 2018

1 reference

Genome sequencing in microfabricated high-density picolitre reactors

21 January 2018

1 reference

Genomic DNA amplification from a single bacterium

21 January 2018

1 reference

Dissecting biological "dark matter" with single-cell genetic analysis of rare and uncultivated TM7 microbes from the human mouth

21 January 2018

1 reference

Accurate whole human genome sequencing using reversible terminator chemistry

21 January 2018

1 reference

Single-molecule DNA sequencing of a viral genome

21 January 2018

1 reference

21 January 2018

1 reference

inferred from DOI database lookup

7 January 2021

based on heuristic

Phylogenetic identification and in situ detection of individual microbial cells without cultivation

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/28787424

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/28787424

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1038/NBT.3893

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC6436528&resulttype=core&format=json

Dimensions Publication ID

13 May 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC6436528&resulttype=core&format=json

13 May 2020

PubMed publication ID

28787424

1 reference