(Q31150285)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27998267%20AND%20SRC:MED&resulttype=core&format=json

30 March 2020

title

acdc - Automated Contamination Detection and Confidence estimation for single-cell genome data (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27998267%20AND%20SRC:MED&resulttype=core&format=json

30 March 2020

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27998267%20AND%20SRC:MED&resulttype=core&format=json

30 March 2020

Irena Maus

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27998267%20AND%20SRC:MED&resulttype=core&format=json

30 March 2020

Andreas Schlüter

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27998267%20AND%20SRC:MED&resulttype=core&format=json

30 March 2020

Barbara Hammer

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27998267%20AND%20SRC:MED&resulttype=core&format=json

30 March 2020

6

Tanja Woyke

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27998267%20AND%20SRC:MED&resulttype=core&format=json

30 March 2020

author name string

Markus Lux

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27998267%20AND%20SRC:MED&resulttype=core&format=json

30 March 2020

Jan Krüger

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27998267%20AND%20SRC:MED&resulttype=core&format=json

30 March 2020

Christian Rinke

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27998267%20AND%20SRC:MED&resulttype=core&format=json

30 March 2020

publication date

20 December 2016

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27998267%20AND%20SRC:MED&resulttype=core&format=json

30 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27998267%20AND%20SRC:MED&resulttype=core&format=json

30 March 2020

volume

17

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27998267%20AND%20SRC:MED&resulttype=core&format=json

30 March 2020

issue

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27998267%20AND%20SRC:MED&resulttype=core&format=json

30 March 2020

page(s)

543

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27998267%20AND%20SRC:MED&resulttype=core&format=json

Accurate binning of metagenomic contigs via automated clustering sequences using information of genomic signatures and marker genes

30 March 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5168860

Single-cell genome sequencing: current state of the science

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5168860

Isolation of acetic, propionic and butyric acid-forming bacteria from biogas plants

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5168860

ProDeGe: a computational protocol for fully automated decontamination of genomes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5168860

CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5168860

Herbinix hemicellulosilytica gen. nov., sp. nov., a thermophilic cellulose-degrading bacterium isolated from a thermophilic biogas reactor.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5168860

Reconstructing each cell's genome within complex microbial communities-dream or reality?

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5168860

Reagent and laboratory contamination can critically impact sequence-based microbiome analyses

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5168860

Effects of sample treatments on genome recovery via single-cell genomics

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5168860

Alignment-free visualization of metagenomic data by nonlinear dimension reduction.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5168860

Kraken: ultrafast metagenomic sequence classification using exact alignments

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5168860

The promise of single-cell sequencing

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5168860

Single-cell analysis: toward the clinic

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5168860

Insights into the phylogeny and coding potential of microbial dark matter

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5168860

metaBEETL: high-throughput analysis of heterogeneous microbial populations from shotgun DNA sequences

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5168860

The future is now: single-cell genomics of bacteria and archaea

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5168860

READSCAN: a fast and scalable pathogen discovery program with accurate genome relative abundance estimation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5168860

Classification of metagenomic sequences: methods and challenges

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5168860

SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5168860

ART: a next-generation sequencing read simulator.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5168860

Decontamination of MDA reagents for single cell whole genome amplification

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5168860

Potential for chemolithoautotrophy among ubiquitous bacteria lineages in the dark ocean.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5168860

BLAST+: architecture and applications

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5168860

The NCBI BioSystems database

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5168860

RNAmmer: consistent and rapid annotation of ribosomal RNA genes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5168860

Application of tetranucleotide frequencies for the assignment of genomic fragments

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5168860

The first five years of single-cell cancer genomics and beyond

21 June 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12859-016-1397-7

Principal Component Analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12859-016-1397-7

Why so many clustering algorithms

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12859-016-1397-7

The Dip Test of Unimodality

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12859-016-1397-7

A tutorial on spectral clustering

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12859-016-1397-7

Complete genome sequence of the methanogenic neotype strain Methanobacterium formicicum MF(T.).

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12859-016-1397-7

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12859-016-1397-7

21 January 2018

Method of the Year 2013

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/27998267

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/S12859-016-1397-7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27998267%20AND%20SRC:MED&resulttype=core&format=json

journals/bmcbi/LuxKRMSWSH16

30 March 2020

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27998267%20AND%20SRC:MED&resulttype=core&format=json

30 March 2020

PubMed publication ID

27998267

1 reference